Overview
Name FK826724 Unique Name FK826724 Type EST Organism Citrus sinensis (Sweet orange) Sequence length 162
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FK826724 vs. ExPASy Swiss-Prot
Match:
RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)
HSP 1 Score: 65.4698 bits (158), Expect = 9.851e-11
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = -2
Query: 9 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKGRMASQPSMNNARP 158
TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM + RP
Sbjct: 135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
BLAST of FK826724 vs. ExPASy Swiss-Prot
Match:
RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)
HSP 1 Score: 65.4698 bits (158), Expect = 9.851e-11
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = -2
Query: 9 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKGRMASQPSMNNARP 158
TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM + RP
Sbjct: 135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
The following BLAST results are available for this feature:
BLAST of FK826724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 12
A C A G T T G G A G G C C T T G C A T T G T T C A T G G A T G G T T G A C T T G C C A T T C T A C C C T T G A T T G A A G C A G C C A T G G C C A T G A A T G C C T G T T C C A C G T T G G T A G A A T C T T T T G C A C T A G T T T C C A T G A A A G G T A T T C C A A T T T C A T C T G C A A A T G C C T T G G C T G T T T C G 20 40 60 80 100 120 140 160 Expect = 9.85e-11 / Id = 64.00 Expect = 9.85e-11 / Id = 64.00 Sequence RAB1B_HUMAN RAB1B_BOVIN
Match Name E-value Identity Description
RAB1B_HUMAN 9.851e-11 64.00 Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more] RAB1B_BOVIN 9.851e-11 64.00 Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
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Properties
Property Name Value
Genbank description clone492 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 492, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>FK826724 ID=FK826724; Name=FK826724; organism=Citrus sinensis; type=EST; length=162bp back to top
