FK826694

Overview
NameFK826694
Unique NameFK826694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FK826694_ssr390 microsatellite FK826694_ssr390:390..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig68 contig Csv1_Contig68:390..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORML1_XENLA (ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:    3 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 299
            V  +++N NT      G+W TY   + +  +++LS+   S  +AWTL ++ H    Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKFLT+
Sbjct:    5 VAHSEVNPNTRVMNSRGMWLTYALGVGMLHIVLLSIPFFSVPVAWTLTNVIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFLTI 104          
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORML1_DANRE (ORM1-like protein 1 OS=Danio rerio GN=ormdl1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    3 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 299
            V  +++N NT      G+W TY   + +  +++LS+   S  + WTL ++ H F  Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKF T+
Sbjct:    5 VAHSEVNPNTRVMNSRGIWLTYALGVGMLHIVLLSIPFFSVPVVWTLTNVIHNFGMYVFMHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTI 104          
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORML1_PONAB (ORM1-like protein 1 OS=Pongo abelii GN=ORMDL1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    3 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 299
            V  +++N NT      G+W TY   + +  +++LS+   S  +AWTL ++ H    Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKF T+
Sbjct:    5 VAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTI 104          
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORML1_HUMAN (ORM1-like protein 1 OS=Homo sapiens GN=ORMDL1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    3 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 299
            V  +++N NT      G+W TY   + +  +++LS+   S  +AWTL ++ H    Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKF T+
Sbjct:    5 VAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTI 104          
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORML1_BOVIN (ORM1-like protein 1 OS=Bos taurus GN=ORMDL1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.414e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    3 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 299
            V  +++N NT      G+W TY   + +  +++LS+   S  +AWTL ++ H    Y F H  KGTPF   DQG    LT WEQ+D G Q T +RKF T+
Sbjct:    5 VAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNVIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTI 104          
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORML2_CHICK (ORM1-like protein 2 OS=Gallus gallus GN=ORMDL2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    3 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 299
            V  +++N NT   +  G+W  Y+  +    +++LS+   S  + WTL ++ H  V Y   H  KGTPF   DQG    LT WEQID G Q T +RKFL++
Sbjct:    5 VAHSEVNPNTRVMSSRGIWLAYVISVAALHVILLSIPFFSIPVVWTLTNVIHNLVMYLLLHTVKGTPFETPDQGKDRLLTHWEQIDYGMQCTSSRKFLSI 104          
BLAST of FK826694 vs. ExPASy Swiss-Prot
Match: ORM2_YEAST (Protein ORM2 OS=Saccharomyces cerevisiae GN=ORM2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.374e-11
Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = -3
Query:    3 NRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTV 281
            N N  W    G W  ++ ++ +   L  SLF  +    WTL ++++    Y  FH  KGTPF  + G Y+ LT WEQI++    T  RKFL +
Sbjct:   69 NMNATWVDQRGAWLIHI-VVIVLLRLFYSLFGSTPKWTWTLTNMTYIIGFYIMFHLVKGTPFDFNGGAYDNLTMWEQINDETLYTPTRKFLLI 160          
The following BLAST results are available for this feature:
BLAST of FK826694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ORML1_XENLA1.981e-1241.00ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE... [more]
ORML1_DANRE1.981e-1240.00ORM1-like protein 1 OS=Danio rerio GN=ormdl1 PE=2 ... [more]
ORML1_PONAB3.380e-1240.00ORM1-like protein 1 OS=Pongo abelii GN=ORMDL1 PE=2... [more]
ORML1_HUMAN3.380e-1240.00ORM1-like protein 1 OS=Homo sapiens GN=ORMDL1 PE=2... [more]
ORML1_BOVIN4.414e-1240.00ORM1-like protein 1 OS=Bos taurus GN=ORMDL1 PE=2 S... [more]
ORML2_CHICK5.765e-1239.00ORM1-like protein 2 OS=Gallus gallus GN=ORMDL2 PE=... [more]
ORM2_YEAST6.374e-1135.48Protein ORM2 OS=Saccharomyces cerevisiae GN=ORM2 P... [more]

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Properties
Property NameValue
Genbank descriptionclone352 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 352, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826694 ID=FK826694; Name=FK826694; organism=Citrus sinensis; type=EST; length=484bp
ACAACAGTCAAAAACTTTCTATTGCGGGTGAGTTGCTTTCCATTATCAAT
CTGCTCCCACCAGGTCAAGCCGTTGTAAATCCCCTGGTCATCGGCAAAGG
GTGTCCCCTTCTTCCAGTGAAAGAAGTGATAAGTAACGAAAAAATGAGAG
AGATGAACGAGGGTCCAAGCCATGCCGGAAGAGCAATTGAAGAGAGAAAG
AACGAGAAGCCATGATATGAATAGAATGGATAAGTATGTCGTCCATACTC
CTGGATACGTGAACCACTCCGTGTTCCTGTTCAGATCCGTCGGTGGCACT
GTCCTTACATACATCTTCTCTTCTCCTTTCCTCACTAACAATCAACTCTT
CGTCTTCTTTACTTACTCACTATTTATACCTTTTTGCTTTTTCTTTCTTT
CTTTCTTTCCTTCTTTAATCTAATGACGATGATGATGTATGCGTTTCAGA
TTTCAGATTTCAGAGGAAAAAGAAAAAATAAAAG
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