FK826688

Overview
NameFK826688
Unique NameFK826688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 46/113 (40.71%), Postives = 76/113 (67.26%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 340
            HRYV FK++           GGP  +Y+DF + LP+ DCRYA++D++F   +  Q++KI FI W+PD + I++KM+Y ++KD  +++L GI  E+QATD +E+  + + +RA+
Sbjct:   23 HRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 134          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.135e-21
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   65 GPAESYDDFTASLPDNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            G  +SYD F   LP+NDCRYAVYDF++ ++S   ++SK+ F  WSPD + +R+KM+YA+SKD  RR L GI  EIQ TD SE+  E + +R
Sbjct:   55 GTTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLER 145          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.799e-20
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   62 GGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            G   +SY++F  SLP ++CRYA+ D +FV  E     KI FIAWSP  +++R KM+Y+++KDRF+RELDGI  E  ATD +++ L+ IR R
Sbjct:   45 GEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRR 131          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.019e-19
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 2
Query:   71 AESYDDFTASLPDNDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            ++SYD+F   LP+NDC YA+YDF++    N  ++SKI F  WSPD + +R+KM+YA+SKD  RR L G+  +IQ TD SE+  E + +R
Sbjct:   47 SQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLER 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.330e-19
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            +++V+F ++          T     SYD F   LP+NDC YAVYDF++  SE+  ++SKI F  WSPD + +R KM+YA+SKD  +R L+G+  EIQ TD SE+  E + ++
Sbjct:   25 YKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEK 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.269e-19
Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            +Y+I+ ++          T   + SYDDF A LP  +CRYA+YDF++   +  +++KI F +WSPD ++I+ KM++A+SKD  R+ L GI  EIQ TD SE+  + + D+
Sbjct:   25 KYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDK 133          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.964e-19
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:   74 ESYDDFTASLPDNDCRYAVYDFDFVTSE-NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            ++YD F   LP+NDCRYAVYDF++   + + +++KI F  WSPD + +RAKM+YA+SKD  RR L+GI  EIQ TD SE+  E + ++
Sbjct:   48 DAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESVLEK 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-19
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    5 RYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            RYV+FK++               + +D F   LP+ DCRYA+YDF+F   E   ++KI FI+WSPDV+ I++KM+Y++SKD  RR   GI  +IQATD SE+  E + ++
Sbjct:   26 RYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.126e-18
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 2
Query:    2 HRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            ++++IF ++          T   ++ YD F   LP+N+C+YA+YDF++ +     ++SKI F  WSPD + I++KM+YA+SKD  RR L+G+  ++Q TD SE+  E + DR
Sbjct:   25 YKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDR 135          
BLAST of FK826688 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.921e-18
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   77 SYDDFTASLPDNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 334
            SYD F   LP+NDC YA+YDF++ +     ++SKI F  WSPD + +R+KM+YA+SKD  RR L+G+  ++Q TD SE+  + + +R
Sbjct:   49 SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLER 135          
The following BLAST results are available for this feature:
BLAST of FK826688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ACTP_ACACA7.536e-2340.71Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI4.135e-2151.65Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
ADF11_ARATH7.799e-2049.45Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_ZYGRO1.019e-1948.31Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_CANGA1.330e-1941.96Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_USTMA2.269e-1940.00Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_PICAN2.964e-1950.00Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_SCHPO5.055e-1942.73Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_DEBHA1.126e-1838.39Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_YEAST1.921e-1845.98Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionclone288 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 288, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826688 ID=FK826688; Name=FK826688; organism=Citrus sinensis; type=EST; length=444bp
ACATCGGTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTAGTGG
TTGAAAAGACTGGAGGCCCAGCTGAGAGCTATGACGATTTCACTGCATCT
TTGCCGGATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGAC
CTCAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTG
ACGTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGG
TTCAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCC
AAGTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATGCC
CTGAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGC
ACAAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAG
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