FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.125e-37
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVR+EK ASY++IKAAIK ESEGKLKGILGYTEDD+VSTDF+GDNRSSIFDAKAGI+L+  FVKLVSWYDNEWGYS
Sbjct:  238 PTCDVSVVDLTVRIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.775e-37
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRLEK A+YDEIKAAIKAESEG LKGILGYTED VVSTDF+GD+RSSIFDA+AGIALS  FVKLVSWYDNEWGYS
Sbjct:  241 PTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYS 326          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.775e-37
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVRLEK A+YDEIKAAIK ESEGKLKGILGYTEDDVVSTDF+GD RSSIFDAKAGIAL+ +FVKLVSWYDNE GYS
Sbjct:  239 PTVDVSVVDLTVRLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYS 324          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.624e-37
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTV+LEK A+Y EIKAAIK ESEGKLKGILGYTEDDVVSTDF+GD+RSSIFDAKAGIAL+  FVKLVSWYDNEWGYS
Sbjct:  241 PTQDVSVVDLTVKLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYS 326          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.799e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVRLEK A+YDEIKAA+KAE+EG LKGILGY E+D+VSTDF GD+RSSIFDAKAGIAL+  FVKLVSWYDNEWGYS
Sbjct:  238 PTVDVSVVDLTVRLEKSATYDEIKAAVKAEAEGSLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.799e-36
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVV LTVRLEK A+Y +IKAAIK ESEGKLKGILGYTEDDVVSTDF+GDNRSSIFDAKAGIAL+   VKLVSWYDNEWGYS
Sbjct:  239 PTVDVSVVGLTVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYS 324          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.349e-36
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLT RLEK A+YDEIKAAIK ESE  LKGILGYTEDDVVSTDFVGD+RSSIFDAKAGIAL+  FVK+VSWYDNEWGYS
Sbjct:  237 PTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.233e-36
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR EK ASYD+IK AIKA SEGKLKGI+GY E+D+VSTDFVGD+RSSIFDAKAGIAL+  FVKLVSWYDNEWGYS
Sbjct:  238 PTVDVSVVDLTVRTEKAASYDDIKKAIKAASEGKLKGIMGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.523e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR+EK ASYD IK+AIK+ SEGKLKGI+GY E+D+VSTDFVGD+RSSIFDAKAGIAL+  FVKLV+WYDNEWGYS
Sbjct:  238 PTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.523e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTVDVSVVDLTVR+EK ASYD IK+AIK+ SEGKLKGI+GY E+D+VSTDFVGD+RSSIFDAKAGIAL+  FVKLV+WYDNEWGYS
Sbjct:  238 PTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYS 323          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3PC_MESCR2.125e-3786.05Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY2.775e-3788.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA2.775e-3789.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA3.624e-3787.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.799e-3684.88Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC1.799e-3687.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR2.349e-3687.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU5.233e-3684.88Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.523e-3582.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.523e-3582.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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