FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.803e-28
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKL----KGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT+DVSVVDL VRLEK+ SYD++K A++  ++GK     KGI+ YTE+DVVSTDFVG N S IFDAKAGIAL+  F+KLV+WYDNEWGY+
Sbjct:  234 PTLDVSVVDLVVRLEKETSYDDVKKAMRDAADGKHPGIEKGIVDYTEEDVVSTDFVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.355e-28
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RL + A Y  IK A+KA ++G + GIL YTED+VVSTDF+GD  SSIFDAKAGIAL+  FVKL+SWYDNE+GYS
Sbjct:  308 PTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYS 393          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.355e-28
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RLEK AS D+IK  IKA ++G +KGIL YTED VVSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS
Sbjct:  242 PTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYS 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.355e-28
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RLEK AS D+IK  +KA +EG LKG+L YTED VVSTDFV D  SSIFDA A I L+  FVKL+SWYDNE+GYS
Sbjct:  242 PTPDVSVVDLTARLEKPASLDDIKKVVKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYS 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.355e-28
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RLEK AS D+IK  IKA ++G +KGIL YTED VVSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS
Sbjct:  242 PTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYS 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 3.075e-28
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YDEIK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  223 PTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 308          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.075e-28
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT+DVSV+DL VRLEK ASY++IK  +K  SEG  KGI+ YTE+ VVS DF+G + SSIFDA+AGI L+  FVKL+ WYDNEWGYS
Sbjct:  234 PTIDVSVIDLVVRLEKPASYEDIKKTVKEASEGAYKGIIEYTEEQVVSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 3.075e-28
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YDEIK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.075e-28
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRLEK AS D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS
Sbjct:  242 PTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYS 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.016e-28
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++VSVVDLT  L+  A+Y+EI  A++  + G+LKG+LGYT++ VVS+DFVG+  SSIFDAKAGIAL K FVKLVSWYDNEWGYS
Sbjct:  240 PTLNVSVVDLTAELKTPATYEEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYS 325          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P1_AGABI1.803e-2866.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3PT_HUMAN2.355e-2869.77Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_CAEEL2.355e-2872.09Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P3_CAEBR2.355e-2870.93Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL2.355e-2872.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_SHEEP3.075e-2872.09Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_LYOSH3.075e-2866.28Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_BOVIN3.075e-2872.09Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P1_CAEEL3.075e-2872.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_MASBA4.016e-2867.44Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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