FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.016e-28
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D  SS+F+ KAGI+L+ +FVKL+SWYDNE+GYS
Sbjct:  233 PTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.016e-28
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  DVSVVDLTVRLEK A+Y+EIK  +KA SE  K K  +GYTED+VVSTDF+GD  SSIFDA AGIAL+  FVKLVSWYDNE GYS
Sbjct:  235 PNCDVSVVDLTVRLEKKATYEEIKKVMKAASESDKYKRYIGYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 4.016e-28
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +KA ++G LKGIL YTED VVS DF GD+ SS FDA AGIAL+  FVKLVSWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 6.851e-28
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.851e-28
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = -1
Query:   10 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEW 258
            PT +VSVVDLT RLEK AS D IKAA+K  +EG LKGILGYTED VVSTDF+GD+RSSIFDA A I+L+  FVKLVSWYDNE+
Sbjct:  242 PTPNVSVVDLTARLEKPASLDAIKAAVKKAAEGNLKGILGYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 8.947e-28
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.947e-28
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 8.947e-28
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 8.947e-28
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.947e-28
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RL + ASY  IK A+KA ++G + GIL YTED VVSTDF GD+ SSIFDAKAGIAL+  FVKLVSWYDNE+GYS
Sbjct:  332 PTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYS 417          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_DROHY4.016e-2867.44Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_DICDI4.016e-2872.41Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_COLLI4.016e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_PIG6.851e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P1_GLORO6.851e-2874.70Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_SPECI8.947e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_MUSPF8.947e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_FELCA8.947e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_CANFA8.947e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3PT_RAT8.947e-2870.93Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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