FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.947e-28
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTVRLEK AS D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIFD  A I+L+  FVKLVSWYDNE+GYS
Sbjct:  242 PTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYS 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.169e-27
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDL VR+EK ASY+EIK  IK  S+  +LKGIL YT+D VVSTDF GD+ SS FDA+ GI+L+  FVKLVSWYDNEWGYS
Sbjct:  235 PTPDVSVVDLVVRIEKGASYEEIKETIKKASQTPELKGILNYTDDQVVSTDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.526e-27
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  ++ SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.526e-27
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A Y++IK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  224 PTPNVSVVDLTCRLEKAAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFKSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYS 309          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 1.526e-27
Identity = 60/86 (69.77%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTE  VVS+DF  D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  236 PTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.526e-27
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A Y++IK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.993e-27
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTV LEK A+  EI AA+K  SEG+LKGILGYTED VVSTDF G   +SI+D+KAGI+L   F K+VSWYDNEWGYS
Sbjct:  235 PTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 1.993e-27
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLEK A+Y +I AAIKA +EG++KGILGYT+D+VVS+DF G   +S+FD KAGI+L+  FVKLVSWYDNE GYS
Sbjct:  233 PTPNVSVVDLTVRLEKPATYKDICAAIKAAAEGEMKGILGYTDDEVVSSDFNGVALTSVFDVKAGISLNDHFVKLVSWYDNETGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.993e-27
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLTV L K ASYDEIK AIK  SE  +KG+LGYT D VVS+DFVG+  SS+FDA AGI L+  FVKL++WYDNE+GYS
Sbjct:  235 PTPDVSVVDLTVNLSKGASYDEIKQAIKKASETTMKGVLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.603e-27
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RL+K AS DEIKAA+K  + G +KGIL YTED VVS+DFVGD  SSIFDA A I+L+  FVKL++WYDNE+GYS
Sbjct:  241 PTPDVSVVDLTCRLQKGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYS 326          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P4_CAEEL8.947e-2870.93Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P_PHARH1.169e-2770.11Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_MOUSE1.526e-2769.77Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_MESAU1.526e-2769.77Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_HUMAN1.526e-2769.77Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_CRIGR1.526e-2769.77Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_BACFR1.993e-2770.93Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PC_LEIME1.993e-2769.77Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_RHIRA1.993e-2769.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_ONCVO2.603e-2769.77Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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