FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.603e-27
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  DVSVVDLT RL + ASY  IK ++K  + G +KGILGYTED VVS+DFVGD  SSIFDA AGI+L+  FVKL+SWYDNE+GYS
Sbjct:  236 PVADVSVVDLTCRLTRPASYANIKESVKKAAHGPMKGILGYTEDSVVSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.603e-27
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT + EK  SY+EI AA+K  +EG+LKGILGYT DDVVS DF  D RSSIFDA AGI L+  F K+VSWYDNEWGYS
Sbjct:  237 PTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.400e-27
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  +EG LKGILGYTED VVS DF  ++ SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDDIKKVVKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.400e-27
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RL +   Y  IK AIKA ++G + GIL YTED+VVSTDF+ D  SSIFDAKAGIAL+  FVKL+SWYDNE+GYS
Sbjct:  295 PTPDVSVVDLTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYS 380          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.400e-27
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K   +G LKG+LGYTE  VVS+DF GD+ SS FDA AGIAL+  FVKLVSWYDNE+GYS
Sbjct:  264 PTANVSVVDLTCRLEKPAKYDDIKRVVKQACDGPLKGMLGYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYS 349          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.441e-27
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = -1
Query:   13 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNE 258
            PT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D  SS+FDAKAGI+L+ +FVKL+SWYDNE
Sbjct:  223 PTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.799e-27
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVR +K A+Y+EI   +K  SE K+KGILGYTED+VVSTDF G   +SIFDAKAG++L+K F KL+SWYDNE GYS
Sbjct:  234 PTANVSVVDLTVRYKKTATYNEICEVVKNASEQKMKGILGYTEDEVVSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.799e-27
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RL+K A+ DEIKAA+K  + G +KGIL YTED VVSTDF GD  SSIFD+ A I+L+  FVKL++WYDNE+GYS
Sbjct:  241 PTPDVSVVDLTCRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYS 326          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.574e-27
Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF     SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.892e-27
Identity = 59/86 (68.60%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTE  VVS+D   D  SS FDA AGIAL+  FVKL+SWYDNE+GYS
Sbjct:  236 PTANVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYS 321          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3PT_DANRE2.603e-2767.44Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_SYNY32.603e-2769.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_RAT3.400e-2768.60Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3PT_BOVIN3.400e-2768.60Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_JACOR3.400e-2768.60Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P2_DROSU4.441e-2769.51Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_BUCAP5.799e-2767.44Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_BRUMA5.799e-2767.44Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_RABIT7.574e-2769.77Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_PONAB9.892e-2768.60Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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