FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.182e-25
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  DVSVV+LT RL +  SY EIK A+K  +EG +KG +GYTE  VVS+DF+GD  SS+FDA AGI+ +  FVKL+SWYDNE+GYS
Sbjct:  236 PVADVSVVELTCRLSRPGSYAEIKGAVKKAAEGPMKGYVGYTEYSVVSSDFIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.182e-25
Identity = 54/86 (62.79%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  +VSVVDLTVR +K A+Y EI   I+  S+ ++KGI+GYTED+VVSTDF G+  +SIFDAKAG++L+K FVKL++WYDNE GYS
Sbjct:  234 PVSNVSVVDLTVRYKKSATYSEICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.182e-25
Identity = 56/86 (65.12%), Postives = 71/86 (82.56%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRLE+ A+Y +I  AIKA SEG+LKGILGY ++++VS+D  G   +S+FDA+AGI+L+  FVKLVSWYDNE GYS
Sbjct:  234 PTPNVSVVDLTVRLERPATYKQICDAIKAASEGELKGILGYVDEEIVSSDINGIPLTSVFDARAGISLNDNFVKLVSWYDNETGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT R +K  +YD+IK A+K  S  +LKGI+ Y+ED +VS+D  GD  S IFDA AGIAL+  F+KLV+WYDNEWGYS
Sbjct:  235 PTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.089e-25
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK ASY+EIK AIKA SEG +KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  228 PTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGAMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 303          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.089e-25
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK ASY+EIK AIKA SEG +KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.089e-25
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK ASY+EIK AIKA SEG +KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.089e-25
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK ASY+EIK AIKA SEG +KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGAMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.259e-25
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT R +K  +YD+IK A+K  S  +LKGI+ Y+ED +VS+D  GD  S IFDA AGIAL+  F+KLV+WYDNEWGYS
Sbjct:  235 PTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.209e-24
Identity = 55/76 (72.37%), Postives = 68/76 (89.47%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLEKPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_ONCMY3.182e-2561.63Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_BUCAI3.182e-2562.79Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PC_TRYBB3.182e-2565.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COCIM5.428e-2561.63Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_KLEPN7.089e-2576.32Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ENTAE7.089e-2576.32Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CITFR7.089e-2576.32Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ESCVU7.089e-2576.32Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_COCP79.259e-2561.63Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_ESCFE1.209e-2472.37Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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