FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.063e-24
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK ASY++IK AIKA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLEKAASYEDIKKAIKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.694e-24
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT +L K A+YD+IKAA+K  SE   LK IL YTED VVSTDF+    SS FDA+AGIAL+  FVKL++WYDNE+GYS
Sbjct:  235 PTPNVSVVDLTCKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.694e-24
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  DVSVVDLTVRL+K  +YD+I  A+K  SE  LKGIL YT++ VVS+DF+G   SSIFDA AGIAL+  F KLV+WYDNE GY+
Sbjct:  235 PIEDVSVVDLTVRLDKSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYA 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.595e-24
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  DVSVVDLT  LEKDA+YDEI A IK  SE +LKGI+ YT +DVVS+DF+    +  FD+KAGI L+  FVKLV+WYDNE+GY+
Sbjct:  236 PVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYA 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.002e-24
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRL K A+Y+EIK A+KA SEG +KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLAKPATYEEIKKAMKAASEGAMKGVLGYTEDDVVSTDFNGETCTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.024e-23
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLT RLEK ASY E+ AAIK  +EG+LKG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTARLEKPASYKEVCAAIKEAAEGELKGVLGYTEDDVVSTDFNGEKLTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.081e-23
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVR +K A+Y++I   IK  S   +K ++GYTED VVS+DF G+  +SIFDAKAG++L+  F+KLVSWYDNE GYS
Sbjct:  234 PTANVSVVDLTVRNKKIATYEDICQIIKYASNHDMKEVIGYTEDHVVSSDFNGNTLTSIFDAKAGLSLNNNFIKLVSWYDNECGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.635e-23
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = -1
Query:   31 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLV 258
            PT +VSVVDLTVRLEK A+Y+EIK A+K  +EG +KG+LGY EDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  219 PTPNVSVVDLTVRLEKPATYEEIKKAMKDAAEGSMKGVLGYVEDDVVSTDFNGEVLTSVFDAKAGIALNDNFVKLV 294          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.666e-23
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKA----GIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT    +D S  EI AA+K  S+  +KGILGYT++++VS DF+ DNRSSI+D+KA     +   + F K+VSWYDNEWGYS
Sbjct:  251 PTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYS 340          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.521e-22
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = -1
Query:   28 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVS 258
            PT DVSVVDL VRLEK+A+YDEIK A+K  ++G LKGI+ YT+D VVSTDF+G   SSIFDA AGI L+K F KL+S
Sbjct:  214 PTNDVSVVDLVVRLEKEATYDEIKLAVKEAADGPLKGIIEYTDDLVVSTDFIGSTASSIFDAGAGIQLNKNFAKLIS 290          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_ESCHE2.063e-2473.68Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ECHMU2.694e-2465.52Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P_CHLPN2.694e-2463.95Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_GIALA4.595e-2462.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P_ESCBL6.002e-2472.37Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_SEROD1.024e-2372.37Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BUCBP5.081e-2360.47Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_SERMA6.635e-2369.74Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PG_TRYCR8.666e-2356.67Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_LACDT2.521e-2267.53Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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