FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.885e-18
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VD  V++EK    +E+  A+K  SEG LKGIL Y+E  +VS+D+ G + SSI DA   + +  + VK+++WYDNEWGYS
Sbjct:  237 PTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.885e-18
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VD  V++EK    +E+  A+K  SEG LKGIL Y+E  +VS+D+ G + SSI DA   + +  + VK+++WYDNEWGYS
Sbjct:  237 PTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.427e-18
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT   S+ D+T  L+++ + +E+ AA+KA +EG LKGIL YTED++V  D V D  SSI DAK   AL    VK+ +WYDNEWGY+
Sbjct:  232 PTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYA 316          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.096e-17
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL   L ++ + +E+ AA+K  +EG LKGILGY+E+ +VS D+ G+  SS  DA + + +    VK++SWYDNE GYS
Sbjct:  235 PTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.442e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKA----GIALSKEFVKLVSWYDNEWGYS 258
            PT   SVVDLT R EK+ S  ++ A +K  SE  L+G+L Y ++D+VS D + +  SSI+D++A     +   K F K+VSWYDNEWGYS
Sbjct:  247 PTPTGSVVDLTFRTEKETSVADLNAMLKKASESYLRGVLQYCDEDIVSADVIHNQYSSIYDSRATLQNNLPNEKRFFKVVSWYDNEWGYS 336          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL   L+K+ + +++  A+K  +EG LKGILGY+E+ +VS D+ G+  SS  DA + + +    VK++SWYDNE GYS
Sbjct:  235 PTPNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = -1
Query:    1 SVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 243
            SV DLTV L   AS DEI AA KA +EG+LKGIL Y +  +VS+D V D  SSIFD+     +  +  K+VSWYDNEWGYS
Sbjct:  246 SVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDDQ-AKVVSWYDNEWGYS 325          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = -1
Query:    1 SVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 243
            SV DLTV L   AS DEI AA KA +EG+LKGIL Y +  +VS+D V D  SSIFD+     +  +  K+VSWYDNEWGYS
Sbjct:  246 SVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDDQ-AKVVSWYDNEWGYS 325          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = -1
Query:    1 SVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 243
            SV DLT  L+K AS ++I AA KA +EG+LKGIL Y +  +VS+D V D  SSIFD+     +  +  K+VSWYDNEWGYS
Sbjct:  246 SVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDNQ-AKVVSWYDNEWGYS 325          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.700e-16
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P    S+VDLTV+L+K D + +EI + ++  SE  +LKGILGYTED +VS+D  G++ SSI D    + L   F K++SWYDNE+GYS
Sbjct:  236 PVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYS 323          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P2_ANAVT2.885e-1848.84Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP2.885e-1848.84Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_THEAQ6.427e-1851.16Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P1_BACSU1.096e-1747.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_TREPA2.442e-1747.78Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
G3P_BACME4.166e-1746.51Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_MYCTU5.441e-1756.79Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO5.441e-1756.79Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCAV5.441e-1754.32Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_BORBU2.700e-1650.00Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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