FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.606e-16
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIK-AESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P    S  DL V L+++ + DE+ AA K A  +G LKGIL YTED +VS+D  GD  S  FD+   +    + VK++ WYDNEWGYS
Sbjct:  236 PVPTGSATDLVVELQREVTKDEVNAAFKKAADDGDLKGILFYTEDAIVSSDITGDPASCTFDSSLTMVQEGKSVKILGWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.606e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++EK+   +++   +K  +   LKG+L YT+ ++VS+DF G + SS  D    + +  + VK+++WYDNEWGYS
Sbjct:  237 PTPNVSVVDLVVQVEKNTIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.015e-16
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL     +D + +E+ AAI+A + G LKG+LG+T +  VS+DF  D  SS+F       +    V+++SWYDNEWG+S
Sbjct:  234 PTPNVSVVDLVFEAARDTTVEEVNAAIEAAACGPLKGVLGFTTEPNVSSDFNHDPHSSVFHMDQTKVMEGRMVRILSWYDNEWGFS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVS+VD T   ++D + +EI + +KA ++ G + G+LGYT++ +VS DF  D  SS  D++    L  +  ++V+WYDNEWG+S
Sbjct:  237 PTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFS 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.899e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P ++VS+VDLTV++ +D S DE+   ++  SEG    +LGY    +VS DF  D RSSIFDA     +S   VK ++WYDNEWG+S
Sbjct:  237 PVINVSLVDLTVQVARDTSVDEVNRLLREASEG--SPVLGYNTQPLVSVDFNHDPRSSIFDAN-HTKVSGRLVKAMAWYDNEWGFS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.899e-15
Identity = 34/86 (39.53%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSV D+ +++ K    +E+  A+   SEG +KGI+ Y+++ +VS D  G + S+I D+   + +  + +K+V+WYDNEWGYS
Sbjct:  314 PTPNVSVCDVVMQVNKKTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDESTIIDSSLTMVMGDDMIKVVAWYDNEWGYS 399          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.899e-15
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V LEK  + ++I + ++  S G   GILGYT++ +VS DF  D RSSI D       +   VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.651e-15
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = -1
Query:    1 SVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 243
            SV DLT  L K  S +EI A  +  +EG+LKGIL Y +  +VS+D V D  SSIFD+     ++ +  K+VSWYDNEWGYS
Sbjct:  246 SVTDLTADLSKCVSVNEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIASQ-AKVVSWYDNEWGYS 325          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.686e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++ K    +E+ AA +  ++ +LKGIL   ++ +VS DF   + SS  DA   + +  + VK+++WYDNEWGYS
Sbjct:  292 PTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYS 377          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.686e-15
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++ K    +E+ AA +  ++ +LKGIL   ++ +VS DF   + SS  D+   + +  + VK+++WYDNEWGYS
Sbjct:  301 PTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 386          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_STRCO4.606e-1647.13Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P2_SYNY34.606e-1643.02Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_RHOSH6.015e-1645.35Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_ZYMMO1.750e-1542.53Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_PSEAE3.899e-1547.67Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3PA_CHOCR3.899e-1539.53Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
E4PD_SHEFN3.899e-1543.02D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_MYCLE6.651e-1550.62Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3PA_TOBAC8.686e-1543.02Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL8.686e-1541.86Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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