FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.686e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++ K    +E+ AA +  +E +LKGIL   ++ +VS DF   + SS  D+   + +  + VK+++WYDNEWGYS
Sbjct:  133 PTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 218          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.686e-15
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT  VSVVDL V++EK    +E+ AA +  + G +KG+L   +  +VS DF   ++S+  DA   + +  + VK+V+WYDNEWGYS
Sbjct:  273 PTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYS 358          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = -1
Query:    1 TVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 255
            T +VSVVDL   L K+ + +E+ AA+KA +EG+LKGIL Y+ + +V  ++ G   SS  D  + + +    VK+VSWYDNE GYS
Sbjct:  237 TANVSVVDLVYELAKEVTVEEVNAALKAIAEGELKGILAYSIEPLVIRNYNGSTVSSTIDILSTMVIDGAMVKVVSWYDNETGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++VS +DL+V L+   + D++  A+K    G+L GIL +TE+ +VS DF  D  S I D        K+ VKL+ W DNEWG+S
Sbjct:  237 PTINVSAMDLSVTLDAKVTIDDVNQALKTVKNGRLNGILDFTEEPLVSVDFNHDAHSCIVDGTQTRVSHKQLVKLLVWCDNEWGFS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_IDILO (D-erythrose-4-phosphate dehydrogenase OS=Idiomarina loihiensis GN=epd PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +V+ +DL+V L  DA+ ++I   ++ +SE +L GIL YTE+ +VS DF  D  SSI D        K  VKL+ W DNEWG++
Sbjct:  240 PTTNVTAMDLSVTLNSDATIEQINQVLREQSERQLAGILDYTEEPLVSIDFNHDPHSSIVDGTQTRVSHKRLVKLLCWCDNEWGFA 325          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.482e-14
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSV D+ +++ K    +E+  A+   + G +KGI+ Y+++ +VS D+ G + S+I D+   + +  + +K+V+WYDNEWGYS
Sbjct:  316 PTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYS 401          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.482e-14
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++ K    +E+ AA +  +E +LKGIL   ++ +VS DF   + S+  D+   + +  + VK+++WYDNEWGYS
Sbjct:  296 PTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYS 381          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEAM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=epd PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.301e-14
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+       + AA+KA ++G   GILGYT++ +VS DF  D RSS+ D       +   VK++ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDTRVDIATVNAALKAAADGSASGILGYTDEPLVSCDFNHDPRSSVVDGTQTRVSAGHLVKMLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.311e-14
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+K    +++   +K  +EG   G++GYT + +VS DF  D RSSI D           VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDKRVDIEQVNRVLKQATEGSFSGVVGYTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.311e-14
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V LEK      +   +++ + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLEKTVDIATVNHVLESAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3PA_SINAL8.686e-1543.02Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE8.686e-1543.02Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_BACCO1.134e-1445.88Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
E4PD_PSEA61.134e-1443.02D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_IDILO1.134e-1444.19D-erythrose-4-phosphate dehydrogenase OS=Idiomarin... [more]
G3PA_GRAVE1.482e-1437.21Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_ARATH1.482e-1441.86Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
E4PD_SHEAM3.301e-1440.70D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPW4.311e-1439.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEB24.311e-1440.70D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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