FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CAVPO (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Cavia porcellus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.353e-14
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = -1
Query:   97 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGD 258
            PT +VSVVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D
Sbjct:   68 PTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGSLKGILGYTEDQVVSCDFNSD 121          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.353e-14
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V + +K  + +++ AA +  ++G LKG+L   ++ +VS DF   + SS  D+   + +  + VK+V+WYDNEWGYS
Sbjct:  291 PTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYS 377          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.353e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    4 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGY 258
            P ++ S+ D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSSI DA + + + +  VK+++WYDNEWGY
Sbjct:  236 PLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGY 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.604e-14
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -1
Query:    7 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWG 258
            PT +VSVVDL V++EK    +EI  A K  + G L G+L  +++ +VS DF   + SS  D+   + +  + VK+V+WYDNEWG
Sbjct:  231 PTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.604e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    4 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGY 258
            P ++ S+ D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSSI DA + + + +  VK+++WYDNEWGY
Sbjct:  236 PLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGY 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.604e-14
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIIDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-13
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = -1
Query:    1 SVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 243
            S+V+L   + +D + DE+  A +A ++G L G+L Y+ED +VS+D  G+  SSIFD++    +    +K+V+WYDNEWG+S
Sbjct:  240 SIVELNTTVARDVTRDEVLDAYRAAAQGPLAGVLEYSEDPLVSSDITGNPASSIFDSEL-TRVDGRHIKVVAWYDNEWGFS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-13
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V + +K  S +++ AA +  +EG LKGIL   +  +VS DF   + S+  D+   + +  + VK+V+WYDNEWGYS
Sbjct:  322 PTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYS 408          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHESR (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-13
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-13
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P_CAVPO7.353e-1470.37Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PB_TOBAC7.353e-1441.38Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P3_ANAVT7.353e-1443.02Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PA_SCEVA9.604e-1442.86Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P3_ANASP9.604e-1443.02Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
E4PD_SHESA9.604e-1439.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_STRAU1.254e-1341.98Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PB_PEA1.254e-1343.68Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
E4PD_SHESR1.254e-1339.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESM1.254e-1339.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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