FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-13
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+K      +   ++  + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.140e-13
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P +  S  DLT   + + + + I AAIK  + G+    L Y+E+ +VSTD V D+  SIFDA     +S   VK+VSWYDNEWGY+
Sbjct:  236 PVITGSATDLTFNTKSEVTVESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGL-TKVSGNTVKVVSWYDNEWGYT 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHESW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.140e-13
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L K      +   ++  + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPC (D-erythrose-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.140e-13
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L K      +   ++  + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_ALTMD (D-erythrose-4-phosphate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.140e-13
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+   + +++  A+++   G+L+GIL YTE+ +VS DF  D  S I D        K+ VK + W DNEWG++
Sbjct:  237 PTINVTAMDLSVTLQSKVTIEQVNQALRSAKAGRLQGILDYTEEPLVSVDFNHDPHSCIVDGTQTRVSHKQLVKTLVWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.794e-13
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++VS+VDL+    +  + +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S
Sbjct:  238 PTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.794e-13
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++VS+VDL+    +  + +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S
Sbjct:  238 PTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFS 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.794e-13
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P  +VS+VDL V L+ D + +E+  A K  ++  + G+L Y+++ +VSTD+  +  S++ D    + +    VK+++WYDNEWGYS
Sbjct:  235 PVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.794e-13
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL++ + KD +  EI   +   SE  LK ILGYTE  +VS DF  D RS I D           VKL+ W DNEWG++
Sbjct:  238 PTINVTAMDLSITVSKDVTIQEINDCLLKASETNLKDILGYTEAPLVSIDFNHDPRSCIIDGTQTRVSDGNLVKLLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            P    SV DLTV   +  S +E+K A  A + G  KG+L Y +  +VSTD VGD  +S+FDA        + VK+V WYDNEWGYS
Sbjct:  236 PVPTGSVTDLTVTTRRGTSVEEVKEAYAAAASGPYKGLLSYVDAPLVSTDIVGD-PASLFDAGLTRVCGPQ-VKVVGWYDNEWGYS 319          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
E4PD_SHEON1.254e-1339.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_CORGL2.140e-1344.19Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
E4PD_SHESW2.140e-1339.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPC2.140e-1339.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_ALTMD2.140e-1338.37D-erythrose-4-phosphate dehydrogenase OS=Alteromon... [more]
G3PP_RALEH2.794e-1343.02Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH2.794e-1343.02Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3P2_BACSU2.794e-1337.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
E4PD_PSYIN2.794e-1343.02D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]
G3P_STRAE3.649e-1346.51Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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