FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS
Sbjct:  236 PTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS
Sbjct:  236 PTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS
Sbjct:  236 PTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS
Sbjct:  236 PTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS
Sbjct:  236 PTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.649e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VS+VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS
Sbjct:  236 PTKNVSLVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.766e-13
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++ K    +E+  A +  +  +L GIL   +  +VS DF   + SS  DA   + +  + VK++SWYDNEWGYS
Sbjct:  303 PTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYS 388          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=epd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.766e-13
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L K    + +   +K  +EG   G++G+T + +VS DF  D RSSI D           VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLNKRVDIETVNQVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.766e-13
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V +  D   + +  A+KA+++ +L+GIL YT + +VS DF  D  S I D        K  +KL+ W DNEWG++
Sbjct:  238 PTINVTAMDLSVTVNTDVDLNAVNNALKAQAKDRLEGILSYTAEPLVSIDFNHDPHSCIIDGTQTRVSHKRLIKLLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.225e-13
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V++ K    +E+  A +  +  +L GIL   ++ +VS DF   + SS  D+   + +  + VK+++WYDNEWGYS
Sbjct:  305 PTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYS 390          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P2_STAAW3.649e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS3.649e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR3.649e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN3.649e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM3.649e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC3.649e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3PA_MAIZE4.766e-1341.86Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
E4PD_SHEPA4.766e-1338.37D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PSEHT4.766e-1338.37D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
G3PA_PEA6.225e-1339.53Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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