FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.130e-13
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L K    + +   +K  +EG   G++G+T + +VS DF  D RSSI D           VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLNKRVDIELVNRVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.062e-12
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEK-DASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL V +EK   + +++  A +  + G LKG+L   +  +VS DF   + SS  D+   + +  + VK+V+WYDNEWGYS
Sbjct:  321 PTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYS 407          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.062e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +D++V L        I + ++  ++G+  GILGYT++ +VS DF  D RSSI DA          VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDFNHDPRSSIVDATQTRVSDGHLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SHELP (D-erythrose-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=epd PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.387e-12
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V L+K    D +   +   + G  +G++GYT   +VS DF  D RSSI D           VKL+ W DNEWG++
Sbjct:  237 PTINVTAIDLSVTLDKRVDIDTVNQVLSQAANGSYQGVVGYTNAPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSV+DL    ++  S +EI  AI A +  +LKGILG+T+   VS DF  +  SS F       +    V+++SWYDNEWG+S
Sbjct:  236 PTPNVSVIDLKFVAKRATSKEEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDA-SYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDL + +EK   + +++  A +  + G +KGIL   +  +VS DF   + S+  D+   + +  + VK+V+WYDNEWGYS
Sbjct:  318 PTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYS 404          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D  S I D           VK++ W DNEWG++
Sbjct:  237 PTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D  S I D           VK++ W DNEWG++
Sbjct:  237 PTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFA 322          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDA---KAGIALSKEFVKLVSWYDNEWGYS 258
            P    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG +  S+FDA   K       + VK+VSWYDNE  Y+
Sbjct:  237 PVPTGSVTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYT 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDA---KAGIALSKEFVKLVSWYDNEWGYS 258
            P    SV +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG +  S+FDA   K       + VK+VSWYDNE  Y+
Sbjct:  237 PVPTGSVTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYT 321          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
E4PD_SHEHH8.130e-1338.37D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PB_SPIOL1.062e-1241.38Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
E4PD_SHEDO1.062e-1239.53D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHELP1.387e-1238.37D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_XANFL1.811e-1243.02Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3PB_ARATH1.811e-1239.08Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
E4PD_AERS41.811e-1237.21D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH1.811e-1237.21D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_STRP84.035e-1246.07Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP64.035e-1246.07Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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