FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.416e-11
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V ++ +   +++  A+   S   L+GI+ YTE  +VS DF  D  S+I D       +K  +KL+ W DNEWG++
Sbjct:  243 PTINVTAMDLSVTVKTNVKVNDVNQALSEVSRCTLEGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNKHLIKLLVWCDNEWGFA 328          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_PECCP (D-erythrose-4-phosphate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=epd PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.610e-11
Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V + K  + +EI A ++  +    +GI+ YTE  +VS DF  D  S+I D        +  +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_ERWCT (D-erythrose-4-phosphate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=epd PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.610e-11
Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V + K  + +EI A ++  +    +GI+ YTE  +VS DF  D  S+I D        +  +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADFNHDPHSAIVDGTQTRVSGQHLIKTLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTV+V+ +DL+V ++ +   +++   I   S+  L+GI+ YTE  +VS DF  D  S+I D       + + VK++ W DNEWG++
Sbjct:  242 PTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFA 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PTV+V+ +DL+V ++ +   +++   I   S+  L+GI+ YTE  +VS DF  D  S+I D       + + VK++ W DNEWG++
Sbjct:  242 PTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFA 327          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SALTY (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhimurium GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I D           +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SALTI (D-erythrose-4-phosphate dehydrogenase OS=Salmonella typhi GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I D           +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SALSV (D-erythrose-4-phosphate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I D           +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I D           +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFA 323          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: E4PD_SALPC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=epd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.938e-11
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT++V+ +DL+V ++K     E+   ++  ++G   GI+ YTE  +VS DF  D  S+I D           +K + W DNEWG++
Sbjct:  238 PTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFA 323          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
E4PD_PHOPR3.416e-1136.05D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
E4PD_PECCP7.610e-1134.88D-erythrose-4-phosphate dehydrogenase OS=Pectobact... [more]
E4PD_ERWCT7.610e-1134.88D-erythrose-4-phosphate dehydrogenase OS=Erwinia c... [more]
E4PD_VIBCH9.938e-1136.05D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBC39.938e-1136.05D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_SALTY9.938e-1133.72D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALTI9.938e-1133.72D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALSV9.938e-1133.72D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPK9.938e-1133.72D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPC9.938e-1133.72D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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