FK826684

Overview
NameFK826684
Unique NameFK826684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:412..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.633e-29
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRL K ASYDEIKA ++  + G LKGILGYT+++VVSTDF+ D  SS+FDAKAGI+L+ +FVKL+SWYDNE+GYS
Sbjct:  233 PTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.744e-29
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +KA +EG LKGILGYTED VVS DF GD+ SS FDA AGIAL+  FVKLVSWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.744e-29
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLTVRL K A+YDEIKA ++  S+G LKGILGYT+++VVSTDF  D  SS+FDAKAGI+L+ +FVKL+SWYDNE+GYS
Sbjct:  233 PTPNVSVVDLTVRLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYS 318          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.196e-29
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT + EK  +YD+IK  IK  SEG+LKGILGY+ED +VS+D  GD+RSSIFDA AGIAL+  F+KL+SWYDNEWGYS
Sbjct:  235 PTANVSVVDLTCKTEKPVTYDQIKQTIKKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYS 320          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.196e-29
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RL + A Y  IK AIKA ++G + GIL YTED+VVSTDFVGD+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS
Sbjct:  309 PTPDVSVVDLTCRLAQPAPYSAIKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYS 394          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.057e-28
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GD+ SS FDA AGIAL+  FVKLVSWYDNE+GYS
Sbjct:  145 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYS 230          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.057e-28
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT +VSVVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GD+ SS FDA AGIAL+  FVKLVSWYDNE+GYS
Sbjct:  234 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYS 319          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.057e-28
Identity = 63/84 (75.00%), Postives = 68/84 (80.95%), Query Frame = -1
Query:    7 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWG 258
            PT DVSVVDLT  LEK A Y++I AA+KA SEG +KGILGYTEDDVVS+DFV D  SS  DAKAGI LS  FVKLVSWYDNEWG
Sbjct:  229 PTQDVSVVDLTCILEKPAKYEDIMAALKAASEGPMKGILGYTEDDVVSSDFVSDPASSTVDAKAGIMLSPTFVKLVSWYDNEWG 312          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.803e-28
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDL  R+EK ASY+EIK  IK  SE  +LKGILGYTED VVSTDF+G   SSIFDA+AGIAL+  FVKLVSWYDNE+GYS
Sbjct:  235 PTSDVSVVDLVCRIEKGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYS 321          
BLAST of FK826684 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.803e-28
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = -1
Query:    1 PTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSKEFVKLVSWYDNEWGYS 258
            PT DVSVVDLT RLEK AS D+IK  IKA +EG LKG+L YTED VVSTDFV D  SSIFDA A I L+  FVKL+SWYDNE+GYS
Sbjct:  242 PTPDVSVVDLTARLEKPASLDDIKRVIKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYS 327          
The following BLAST results are available for this feature:
BLAST of FK826684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
G3P2_DROME3.633e-2969.77Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_COTJA4.744e-2973.26Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P1_DROME4.744e-2969.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_AJECA6.196e-2968.60Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3PT_MACFA6.196e-2972.09Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_MELGA1.057e-2872.09Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CHICK1.057e-2872.09Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3PC_SCEVA1.057e-2875.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYNE1.803e-2873.56Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P2_CAEBR1.803e-2872.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionclone284 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 284, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826684 ID=FK826684; Name=FK826684; organism=Citrus sinensis; type=EST; length=258bp
ACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTCCT
TACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTATTGTCA
CCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGATACC
CTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCAT
AAGAAGCATCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGACATCA
ACAGTGGG
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