FK826670

Overview
NameFK826670
Unique NameFK826670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.057e-13
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   89 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL +DVDEL   +  W ++A PTF
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTF 103          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 8.057e-13
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.374e-12
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.374e-12
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTF 77          
BLAST of FK826670 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.795e-12
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  149 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 328
            A  KL+VVDF+A+WC PCK++ P    L++K   V+F++VDVD+ K +A E  V+ MPTF
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTF 77          
The following BLAST results are available for this feature:
BLAST of FK826670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TRXH_POPJC8.057e-1337.50Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO_PIG8.057e-1351.67Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_SHEEP1.052e-1251.67Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PONAB1.052e-1253.33Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_HUMAN1.052e-1253.33Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_HORSE1.052e-1251.67Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_BOVIN1.052e-1251.67Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MACMU1.374e-1251.67Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA1.374e-1251.67Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT1.795e-1250.00Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionclone232 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 232, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826670 ID=FK826670; Name=FK826670; organism=Citrus sinensis; type=EST; length=329bp
ACGCGGGGACCAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAG
TAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATC
AGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGC
GGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCAT
GCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCT
GTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGA
ATGGGCTGTGGAAGCCATGCCGACCTTTG
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