FK826636

Overview
NameFK826636
Unique NameFK826636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12878 contig Csv1_Contig12878:469..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI2_XENLA (Protein DDI1 homolog 2 OS=Xenopus laevis GN=ddi2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.888e-30
Identity = 58/107 (54.21%), Postives = 84/107 (78.50%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++ +VNG P KAFVDSGAQ TI+S++CAERC +++L+D R+ G+A GVG  +I+GR+H+A ++I   F PCSF +L+   M+ L GLDML++HQC IDL++NVL +G
Sbjct:  232 INCKVNGYPVKAFVDSGAQMTIMSQACAERCHIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLEKNVLVIG 338          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_RAT (Protein DDI1 homolog 1 OS=Rattus norvegicus GN=Ddi1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.888e-30
Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++ +VNG P KAFVDSGAQ TI+S++CAERC +++L+D R+ GVA GVG   I+GR+H+A I+I   F  CSF +L+   M+ L GLDMLR+HQC IDLK+NVL +G
Sbjct:  252 INCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDMLRRHQCSIDLKKNVLVIG 358          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_MACFA (Protein DDI1 homolog 1 OS=Macaca fascicularis GN=DDI1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.888e-30
Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++ +VNG P KAFVDSGAQ TI+S++CAERC +++L+D R+ GVA GVG   I+GR+H+A I+I   F  CSF +L+   M+ L GLDMLR+HQC IDLK+NVL +G
Sbjct:  246 INCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIG 352          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_HUMAN (Protein DDI1 homolog 1 OS=Homo sapiens GN=DDI1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.888e-30
Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++ +VNG P KAFVDSGAQ TI+S++CAERC +++L+D R+ GVA GVG   I+GR+H+A I+I   F  CSF +L+   M+ L GLDMLR+HQC IDLK+NVL +G
Sbjct:  246 INCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIG 352          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_MOUSE (Protein DDI1 homolog 1 OS=Mus musculus GN=Ddi1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.466e-30
Identity = 61/107 (57.01%), Postives = 82/107 (76.64%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++ +VNG P KAFVDSGAQ TI+S++CAERC +++L+D R+ GVA GVG   I+GR+H+A I+I   F  CSF +L+   M+ L GLDMLR+HQC IDLK+NVL +G
Sbjct:  252 INCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWGGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDMLRRHQCSIDLKKNVLVIG 358          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI2_MOUSE (Protein DDI1 homolog 2 OS=Mus musculus GN=Ddi2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.174e-30
Identity = 58/107 (54.21%), Postives = 82/107 (76.64%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++  VNG P KAFVDSGAQ TI+S++CAERC +++L+D R+ G+A GVG  +I+GR+H+A ++I   F  CSF +L+   M+ L GLDML++HQC IDLK+NVL +G
Sbjct:  238 INCRVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIG 344          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_BOVIN (Protein DDI1 homolog 1 OS=Bos taurus GN=DDI1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.370e-30
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = -2
Query:   18 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVG 338
            ++  VNG P KAFVDSGAQ TI+++ CAERC +++L+D R+ GVA GVG   ILGR+H+A I+I   F  CSF +L+   M+ L GLDMLR+HQC IDLK NVL +G
Sbjct:  240 INCRVNGHPLKAFVDSGAQMTIMNQVCAERCNIIRLVDRRWAGVAKGVGTQRILGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDMLRRHQCSIDLKRNVLVIG 346          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_CANGA (DNA damage-inducible protein 1 OS=Candida glabrata GN=DDI1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.073e-29
Identity = 63/110 (57.27%), Postives = 81/110 (73.64%), Query Frame = -2
Query:    9 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGE 338
            ++ME+NG P KAFVDSGAQ TIIS   AE+  L + +D+R+ G A GVG  +ILGR+H   +KI   F PCSFVVLDS N++ L GLDML++HQ  IDL++NVLR+ G E
Sbjct:  210 INMEINGHPVKAFVDSGAQMTIISPRLAEKTELKRFIDNRFIGEARGVGTGKILGRVHQVQVKIETQFIPCSFVVLDS-NVDLLLGLDMLKRHQACIDLEKNVLRIAGTE 318          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_CHAGB (DNA damage-inducible protein 1 OS=Chaetomium globosum GN=DDI1 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.036e-28
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = -2
Query:    6 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEV 338
            +++EVNG   KA VDSGAQ+TI+S  CAE CG+++L+D R+ G+A GVG + I+GR+H A IKIG +F PCSF V++   +E L GLDML+++Q  IDL ++ L + G EV
Sbjct:  216 LEVEVNGYKVKALVDSGAQATIMSPQCAEACGIMRLVDKRFSGIARGVGTANIIGRVHSAQIKIGPLFLPCSFTVMEGKQVEMLLGLDMLKRYQASIDLAKDKLIIQGVEV 326          
BLAST of FK826636 vs. ExPASy Swiss-Prot
Match: DDI1_COCIM (DNA damage-inducible protein 1 OS=Coccidioides immitis GN=DDI1 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = -2
Query:   21 VDMEVNGIPSKAFVDSGAQSTIISKSCAERCGLLKLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRV 338
            +  EVN    KAFVDSGAQ TI+S  CA  C ++ L+D RY GVA GVG + ILGR+H+A IKI ++F PCSF V++  +++ L GLDML+++Q  IDLK+NVLR+
Sbjct:  191 IPAEVNSHKVKAFVDSGAQVTIMSPECAAACNIMHLVDRRYSGVAKGVGTASILGRVHLAHIKIDDLFLPCSFTVMEGKHIDLLLGLDMLKRYQACIDLKDNVLRI 296          
The following BLAST results are available for this feature:
BLAST of FK826636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DDI2_XENLA1.888e-3054.21Protein DDI1 homolog 2 OS=Xenopus laevis GN=ddi2 P... [more]
DDI1_RAT1.888e-3057.01Protein DDI1 homolog 1 OS=Rattus norvegicus GN=Ddi... [more]
DDI1_MACFA1.888e-3057.01Protein DDI1 homolog 1 OS=Macaca fascicularis GN=D... [more]
DDI1_HUMAN1.888e-3057.01Protein DDI1 homolog 1 OS=Homo sapiens GN=DDI1 PE=... [more]
DDI1_MOUSE2.466e-3057.01Protein DDI1 homolog 1 OS=Mus musculus GN=Ddi1 PE=... [more]
DDI2_MOUSE7.174e-3054.21Protein DDI1 homolog 2 OS=Mus musculus GN=Ddi2 PE=... [more]
DDI1_BOVIN9.370e-3057.01Protein DDI1 homolog 1 OS=Bos taurus GN=DDI1 PE=2 ... [more]
DDI1_CANGA6.073e-2957.27DNA damage-inducible protein 1 OS=Candida glabrata... [more]
DDI1_CHAGB1.036e-2852.25DNA damage-inducible protein 1 OS=Chaetomium globo... [more]
DDI1_COCIM3.937e-2854.72DNA damage-inducible protein 1 OS=Coccidioides imm... [more]

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Properties
Property NameValue
Genbank descriptionclone413 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 413, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826636 ID=FK826636; Name=FK826636; organism=Citrus sinensis; type=EST; length=339bp
ACTGAAACCTCTCCTCCACCAACTCTTAAGACATTCTCTTTTAGATCAAT
GATACACTGGTGCTTGCGGAGCATATCTAGTCCAAAGAGGAACTCCATGT
TGGGAGAGTCCAACACGACAAATGAACATGGGTAGAATACATTGCCAATC
TTGATTGGAGCAACGTGTATTCGACCAAGAATCTCTGATTGACCAACTCC
ATGAGCAACACCTCTATAACGATCATCTAGAAGCTTCAGCAATCCACAAC
GCTCTGCACAGCTTTTTGATATAATTGTTGACTGTGCACCACTATCTACA
AATGCCTTCGAAGGAATACCATTAACCTCCATGTCAACG
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