FE659326

Overview
NameFE659326
Unique NameFE659326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1150 contig Csv1_Contig1150:508..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FE659326 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.629e-11
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = -3 
Query:   81 QKVVKGNPNPRSYYKCTHP-GCPVRKHVERASHDLRAVITTYEGKHNHD 224
            QK +KG+P+PR YYKC+   GCP RKHVER   D   +I TYEG HNH+
Sbjct:  342 QKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHN 390
[Close]
BLAST of FE659326 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.629e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = -3 
Query:   84 QKVVKGNPNPRSYYKCTHP-GCPVRKHVERASHDLRAVITTYEGKHNH 224
            QK +KG+P+PR YYKC+   GCP RKHVER   +   +I TYEG+HNH
Sbjct:  272 QKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNH 319
[Close]
BLAST of FE659326 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.964e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = -3 
Query:   84 QKVVKGNPNPRSYYKCTHP-GCPVRKHVERASHDLRAVITTYEGKHNH 224
            QK +KG+P+PR YYKC+   GCP RKHVER   +   +I TYEG+HNH
Sbjct:  272 QKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNH 319
The following BLAST results are available for this feature:
BLAST of FE659326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
WRKY1_MAIZE7.629e-1159.18Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK74_ARATH7.629e-1158.33Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK39_ARATH9.964e-1158.33Probable WRKY transcription factor 39 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionA113 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659326 ID=FE659326; Name=FE659326; organism=Citrus sinensis; type=EST; length=226bp
CTATTGCTGTTACTGTTATGGTTATTATTGCTGCTATTATCCGGCAGAGC
CCTGCTGCCGCTGCCGCGAGCTGCCGGAACATCATGGTTGTGCTTTCCCT
CATAGGTTGTGATCACTGCTCTAAGATCGTGTGATGCTCTCTCAACATGC
TTTCTCACTGGACAACCTGGATGCGTACACTTGTAATAACTCCTTGGATT
TGGATTCCCCTTTACAACTTTTTGGC
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