FE659323

Overview
NameFE659323
Unique NameFE659323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:417..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.407e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = -3
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALL+FTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPK 161          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.400e-25
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = -3
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK MICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKHMICCCNKMDATTPK 161          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.400e-25
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = -3
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIID TTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.556e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = -3
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTG F+AGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGVFQAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.848e-18
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = -3
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+TLGVKQMI   NK D  T K
Sbjct:  107 SQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVATNKFDDKTVK 161          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = -3
Query:    9 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 167
            SQAD A+LII S  G FEAGISKDGQTREHALLAFTLGVKQM+ CCNKMD  T
Sbjct:  107 SQADAAILIIASAQGEFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKT 159          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.104e-17
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ S+TG FEAGISK+GQTREHALLAFTLGVKQMI   NK+D T P
Sbjct:  108 SQADCAVLIVASSTGEFEAGISKNGQTREHALLAFTLGVKQMIVAVNKIDNTEP 161          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.360e-17
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTDP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.360e-17
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  107 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.360e-17
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  108 SQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEP 161          
The following BLAST results are available for this feature:
BLAST of FE659323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
EF1A_SOYBN1.407e-2598.18Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A2_HORVU2.400e-2598.18Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_DAUCA2.400e-2598.18Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A1_HORVU1.556e-2496.36Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_EUGGR4.848e-1881.82Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_TRYBB1.411e-1781.13Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_HYDAT4.104e-1779.63Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_ONCVO5.360e-1777.78Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A4_OSCTI5.360e-1777.78Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A3_OSCTI5.360e-1777.78Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]

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Properties
Property NameValue
Genbank descriptionA85 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659323 ID=FE659323; Name=FE659323; organism=Citrus sinensis; type=EST; length=169bp
TACTTGGGGGTGGTGGCATCCATCTTGTTACAGCAGCAAATCATCTGCTT
CACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCT
TGGAGATACCAGCTTCAAAACCACCGGTGGTAGAGTCAATGATAAGGACG
GCACAGTCAGCCTGTGAGG
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