FE659323

Overview
NameFE659323
Unique NameFE659323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.365e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = -3
Query:   18 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 167
            SQAD A+L++ +  GGF+   SK+GQT+EH LLAFTLGVKQ++   NKMD
Sbjct:  107 SQADVALLVVPADVGGFDGAFSKEGQTKEHVLLAFTLGVKQIVVGVNKMD 156          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.497e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P
Sbjct:  106 SQADAAILVVSAKKGEYEAGMSAEGQTREHIILAKTMGINQVIVAVNKMDLTDP 159          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.497e-11
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = -3
Query:   15 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 167
            SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G++Q+I   NKMDA
Sbjct:  106 SQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDA 156          
The following BLAST results are available for this feature:
BLAST of FE659323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
EF1A_PLAFK3.365e-1160.00Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_SULTO7.497e-1153.70Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_AERPE7.497e-1158.82Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]

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Properties
Property NameValue
Genbank descriptionA85 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659323 ID=FE659323; Name=FE659323; organism=Citrus sinensis; type=EST; length=169bp
TACTTGGGGGTGGTGGCATCCATCTTGTTACAGCAGCAAATCATCTGCTT
CACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCT
TGGAGATACCAGCTTCAAAACCACCGGTGGTAGAGTCAATGATAAGGACG
GCACAGTCAGCCTGTGAGG
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