FE659323

Overview
NameFE659323
Unique NameFE659323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:417..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD++ P
Sbjct:  107 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.926e-16
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.926e-16
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = -3
Query:   12 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 167
            SQADC +LII + TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+T
Sbjct:  107 SQADCGILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDST 158          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.926e-16
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQAD A+LII S TG FEAGISK+GQTREHALLA+T+GVKQM+   NKMD+T P
Sbjct:  107 SQADAAILIIASGTGEFEAGISKEGQTREHALLAYTMGVKQMVVAMNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.740e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.740e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.740e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:   18 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 167
            SQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD
Sbjct:  108 SQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD 157          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = -3
Query:   15 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 167
            SQADCA+LII   TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD+
Sbjct:  107 SQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDS 157          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = -3
Query:   15 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 167
            SQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+
Sbjct:  107 SQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDS 157          
The following BLAST results are available for this feature:
BLAST of FE659323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
EF1A1_DROME4.538e-1675.93Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_ORYLA5.926e-1675.93Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_ABSGL5.926e-1676.92Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A1_EUPCR5.926e-1674.07Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DANRE7.740e-1675.93Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A3_XENLA7.740e-1675.93Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A2_XENLA7.740e-1675.93Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_TRIRE1.011e-1580.00Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_CANAL1.011e-1578.43Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_ARXAD1.011e-1578.43Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionA85 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659323 ID=FE659323; Name=FE659323; organism=Citrus sinensis; type=EST; length=169bp
TACTTGGGGGTGGTGGCATCCATCTTGTTACAGCAGCAAATCATCTGCTT
CACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCT
TGGAGATACCAGCTTCAAAACCACCGGTGGTAGAGTCAATGATAAGGACG
GCACAGTCAGCCTGTGAGG
back to top