FE659323

Overview
NameFE659323
Unique NameFE659323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = -3
Query:   12 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 167
            SQADCA+L I   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T
Sbjct:  107 SQADCAILTIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTT 158          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:   18 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 167
            SQADCAVL+I S TG FEAGI+K+GQTREHALLA+TLGVKQMI   NKMD
Sbjct:  107 SQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMD 156          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD T P
Sbjct:  107 SQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = -3
Query:   12 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 167
            SQADCA+LII   TG FEAGISKDGQTREHALLAFTLG +Q+I   NKMD T
Sbjct:  107 SQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTT 158          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160          
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = -3
Query:    6 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 167
            SQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  107 SQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160          
The following BLAST results are available for this feature:
BLAST of FE659323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
EF1A_SCHCO1.320e-1576.92Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_DICDI1.320e-1580.00Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_CHICK1.320e-1574.07Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_ARTSA1.320e-1574.07Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_APIME1.320e-1575.93Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A3_HUMAN1.320e-1574.07Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RHIRA1.320e-1576.92Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A2_RAT1.320e-1574.07Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT1.320e-1574.07Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE1.320e-1574.07Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]

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Properties
Property NameValue
Genbank descriptionA85 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659323 ID=FE659323; Name=FE659323; organism=Citrus sinensis; type=EST; length=169bp
TACTTGGGGGTGGTGGCATCCATCTTGTTACAGCAGCAAATCATCTGCTT
CACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCT
TGGAGATACCAGCTTCAAAACCACCGGTGGTAGAGTCAATGATAAGGACG
GCACAGTCAGCCTGTGAGG
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