FE659260

Overview
NameFE659260
Unique NameFE659260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.295e-42
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = -2
Query:    3 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 356
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPL
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 179          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.295e-42
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = -2
Query:    3 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 356
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPL
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 179          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.295e-42
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = -2
Query:    3 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 356
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPL
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 179          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.796e-33
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = -2
Query:    6 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 356
            A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSP 121          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.136e-33
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = -2
Query:    6 SIMAS-KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 365
            S+ AS KRI +E+ +L  DPP  CSAGP  ++++HW ATI+GP  +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P
Sbjct:   33 SVSASGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSP 153          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 9.945e-31
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:    6 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 365
            S  A +R++++ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P
Sbjct:    2 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSP 121          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.696e-30
Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = -2
Query:    6 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 365
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.216e-30
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:    6 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 365
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.216e-30
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:    6 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 365
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121          
BLAST of FE659260 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.779e-30
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = -2
Query:    3 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 350
            +RI+KE + L  +P    SA P  E+M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123          
The following BLAST results are available for this feature:
BLAST of FE659260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
UB2E3_MOUSE3.295e-4266.10Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN3.295e-4266.10Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN3.295e-4266.10Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC3_ARATH2.796e-3354.70Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
COP10_ARATH8.136e-3350.41Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBCD6_DROME9.945e-3149.17Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_WHEAT1.696e-3050.00Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_ARATH2.216e-3049.17Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH2.216e-3049.17Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC36_ARATH3.779e-3053.45Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank description329 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659260 ID=FE659260; Name=FE659260; organism=Citrus sinensis; type=EST; length=549bp
ACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGAGCAGATAGAAAG
CAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTTCTTTAAGGATAT
CAAGACATATGCTTCCATTGCTGTTGATGTTTGGGTGGAAGACCTTGGTC
CTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCTGGAGGAAAATGAAT
GGTAACCAAAAATACACCTCCTGCATATGGACTATCAGGGGGGCCCATAA
TTGTTGCTTGCCAATGGAACATGTCTTCAGCCACCGGACCAGCGCTGCAA
GACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCTTCAAAATACGCTT
CGAAGCCATGATGCTTCAACGGATTATTAAAAGTTAAAGCCACAACAAAC
CTAGGATCTGCAACACTTGTGCGGCGAAGAAGGAGATCGGAGGGCAATAG
CAGTGAGAAAGGGGAACGGCTTCGGAGCAGATCTGCGGCGGCTACTGGCC
GTCCCGACCTCTCTCCTCTACAATCTCTTGCCTTTGTTATTCAAGGCAA
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