FE659251

Overview
NameFE659251
Unique NameFE659251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length281
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.107e-25
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = -2
Query:   14 YATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 274
            YA  LDP+   + TI P+  G IVGAN LAGG F GASMNPA SFGPA+ +  W NHWVYW+GPL+GG LAG VYE  F +N++HE L
Sbjct:  166 YAMILDPRS-QVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = -2
Query:   14 VYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 277
            VYAT LDP+    G   P+  G IVGAN +AGG F GASMNPA SFGPAL +  W +HW+YW+GPLIGG LAG+VYE  F + ++HE L
Sbjct:  159 VYATILDPRSSVPG-FGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIGGPLAGLVYESLFLVKRTHEPL 246          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.860e-24
Identity = 53/88 (60.23%), Postives = 61/88 (69.32%), Query Frame = -2
Query:   14 YATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 274
            YA  LDP+   +  I P+  G IVGAN LAGG F GASMNPA SFGPAL +  W NHWVYW+GPL+GG LAG VYE  F + + HE L
Sbjct:  164 YAMILDPRS-QVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = -2
Query:   11 VYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN-----QSHEQLP 277
            + AT LDP++ +     P+  G +VGAN +AGGA  GASMNPA SFGPAL +  W +HWVYWVGPL GG LA + YE  F++      +H+ LP
Sbjct:  161 ICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAGGPLAVVAYELLFMDVEDAGGAHQPLP 254          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = -2
Query:   11 VYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE--FFFINQSHEQLP 277
            +YAT LDP+K   G   P+  G +VGAN +AG A  GASMNPA SFGPA+ S  W +HWVYWVGPL GG LA +VYE  F     +H+ LP
Sbjct:  156 IYATILDPRKLLPGA-GPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAAPTHDLLP 245          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.805e-18
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = -2
Query:   47 TALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 268
            TA DP++G    + PI IGF+ GAN+LA G F G SMNPA +FG A+V  S+ N  VYWVGPL+GG  A +VY+
Sbjct:  163 TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYD 236          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.061e-17
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = -2
Query:   38 TVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 280
            T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  176 TIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 255          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.183e-16
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = -2
Query:   38 TVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 280
            T++A+    +    G++A +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  173 TIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 252          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.019e-16
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = -2
Query:   44 VYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 277
            ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGLA ++Y+F
Sbjct:  145 IFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLASLLYDF 221          
BLAST of FE659251 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.019e-16
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = -2
Query:   44 VYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 277
            ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  145 IFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTNHWVYWVGPIIGGGLGSLLYDF 221          
The following BLAST results are available for this feature:
BLAST of FE659251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
TIP42_MAIZE3.107e-2561.36Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ2.014e-2459.55Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE5.860e-2460.23Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP42_ORYSJ1.222e-2151.06Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE3.555e-2156.04Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP51_ARATH4.805e-1855.41Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQP4_NOTAL9.061e-1749.38Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_RAT1.183e-1648.15Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
MIP_RABIT2.019e-1648.72Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_HUMAN2.019e-1647.44Lens fiber major intrinsic protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank description257 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659251 ID=FE659251; Name=FE659251; organism=Citrus sinensis; type=EST; length=281bp
ACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGAACTCG
TAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAGTAGAC
CCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCCAAATGACACTG
CTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGTTGGCT
CCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTT
CTTTGGGTCCAGGGCTGTGGCATACACTGTG
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