FE659184

Overview
NameFE659184
Unique NameFE659184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length178
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_CHICK (Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC2_XENLA (Cytochrome c, testis-specific OS=Xenopus laevis GN=cyct PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+K+F  KC+QCHTVEKG  HK GPNL+GLFGR++G   G
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC1B_XENLA (Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-B PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+A  G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  PG
Sbjct:    2 GDAGKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_STELP (Cytochrome c OS=Stellaria longipes PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+AK G  +FKT+CAQCHT+ +G G+K GPNL+GLFGR +G+  G
Sbjct:    6 GDAKKGANLFKTRCAQCHTLGEGEGNKIGPNLHGLFGRHTGSVEG 50          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_SQUSU (Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+K+F  KCAQCHTVE G  HK GPNL+GLFGR++G   G
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKTGPNLSGLFGRKTGQAQG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_ISSOR (Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+AK G  +FKT+CAQCHT+E G  HK GPNL+G+F R SG   G
Sbjct:    7 GSAKKGATLFKTRCAQCHTIEAGGPHKVGPNLHGIFSRHSGQAEG 51          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_APTPA (Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+G+FGR++G   G
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGIFGRKTGQAEG 46          
The following BLAST results are available for this feature:
BLAST of FE659184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CYC_CHICK5.669e-1162.22Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2[more]
CYC2_XENLA5.669e-1160.00Cytochrome c, testis-specific OS=Xenopus laevis GN... [more]
CYC1_XENTR7.404e-1164.44Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]
CYC1B_XENLA7.404e-1166.67Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-... [more]
CYC_STELP9.670e-1160.00Cytochrome c OS=Stellaria longipes PE=3 SV=1[more]
CYC_SQUSU9.670e-1160.00Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2[more]
CYC_ISSOR9.670e-1160.00Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE... [more]
CYC_APTPA9.670e-1160.00Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=... [more]

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Properties
Property NameValue
Genbank description82 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659184 ID=FE659184; Name=FE659184; organism=Citrus sinensis; type=EST; length=178bp
ACCCAGGTGTAGTCCCCGATTGCCTTCCAAACAATCCGTTCAAATTAGGA
CCTTGTTTGTGACCGGCGCCTTTCTCGACGGTGTGGCACTGAGCGCACTT
GGTCTTGAAGATCTTCTCTCCGGCCTTTGCATTGCCGGGAGGTGCCTCAT
CAAACGACGCCATTATTGTGGTGTTTTG
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