FE659176

Overview
NameFE659176
Unique NameFE659176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.740e-26
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I V+DE G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   39 DVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.740e-26
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I V+DE G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   39 DVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_ECO57 (NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.740e-26
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I V+DE G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   39 DVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.740e-26
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I V+ E G I DACFKT+GCGSAIASSS+ TEWVKGK ++E  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   39 DVMKLQIKVN-EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_HAEIN (NifU-like protein OS=Haemophilus influenzae GN=nifU PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.088e-25
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I VDD  G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK
Sbjct:   39 DVMQLQIKVDDN-GIIEDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.088e-25
Identity = 55/87 (63.22%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I V+++ G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K
Sbjct:   39 DVMKLQIKVNEQ-GIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: ISU1_TRAHO (Iron sulfur cluster assembly protein 1 OS=Trachipleistophora hominis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.856e-25
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    4 DCGIVLLEGP---DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D G  L+  P   DV ++ I V+++   I DA F+TFGCGSAIASSS+ATEW+KGK + + L I N +IAK LSLPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   38 DVGTGLVGAPACGDVMKLQIKVENDI--IKDAKFRTFGCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDYQKK 135          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.166e-25
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            DV ++ I V+ + G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   39 DVMKLQIKVN-KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNK 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: ISU1_YARLI (Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica GN=ISU1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.203e-24
Identity = 63/100 (63.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    4 DCGIVLLEGP---DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D G  L+  P   DV ++ I VDD  G I D  FKTFGCGSAIASSS  TE V+GK + E   IKNT IAK LSLPPVKLHCSMLAEDAIK+A+ DY +K
Sbjct:   60 DVGTGLVGAPACGDVMKLQIRVDDN-GVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSK 158          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: ISU1_SCHPO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=isu1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.971e-24
Identity = 62/100 (62.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    4 DCGIVLLEGP---DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D GI L+  P   DV R+ I V+ + G I D  FKTFGCGSAIASSS  T  VKG  ++E   IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K
Sbjct:   77 DVGIGLVGAPACGDVMRLAIRVNKD-GVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSK 175          
The following BLAST results are available for this feature:
BLAST of FE659176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NIFU_ECOLI3.740e-2666.67NifU-like protein OS=Escherichia coli (strain K12)... [more]
NIFU_ECOL63.740e-2666.67NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]
NIFU_ECO573.740e-2666.67NifU-like protein OS=Escherichia coli O157:H7 GN=n... [more]
NIFU_BUCAI3.740e-2666.67NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
NIFU_HAEIN1.088e-2566.67NifU-like protein OS=Haemophilus influenzae GN=nif... [more]
NIFU_BUCAP1.088e-2563.22NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
ISU1_TRAHO1.856e-2561.00Iron sulfur cluster assembly protein 1 OS=Trachipl... [more]
NIFU_BUCBP3.166e-2564.37NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
ISU1_YARLI1.203e-2463.00Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_SCHPO5.971e-2462.00Iron sulfur cluster assembly protein 1, mitochondr... [more]

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Properties
Property NameValue
Genbank description50 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659176 ID=FE659176; Name=FE659176; organism=Citrus sinensis; type=EST; length=296bp
ACCGACTGTGGCATCGTTCTTCTCGAAGGACCCGACGTTTCGCGGGTTAT
TATAGTGGTCGATGACGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGA
CCTTTGGCTGTGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGG
GTGAAAGGGAAGCAGATGCAGGAAGTCTTGTCCATTAAAAACACGGAAAT
TGCAAAACATCTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTG
CTGAAGATGCTATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACG
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