FE659176

Overview
NameFE659176
Unique NameFE659176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13673 contig Csv1_Contig13673:1..296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: ISU1_ENCCU (Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi GN=ISU1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.055e-23
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 285
            DV ++ I V  +   I DA FKTFGCGSAIASSS+ATEW+K K + E L I N +IAK LSLPP+KLHCSMLAEDAIK A+KD+
Sbjct:   50 DVMKLQIKVGKDN-VIEDAKFKTFGCGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDF 132          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_AZOVI (Nitrogen fixation protein nifU OS=Azotobacter vinelandii GN=nifU PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.870e-18
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D  R+ + VD ET  I+DA F+TFGCGSAIASSS  TE VKG  + E L I N +IA +L  LPP K+HCS++  +A++AAV +Y  +
Sbjct:   37 DALRLTLKVDPETDVILDAGFQTFGCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_AZOCH (Nitrogen fixation protein nifU OS=Azotobacter chroococcum mcd 1 GN=nifU PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.817e-16
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D  R+ + VD ET  I+DA F+TFGCGSAIASSS  TE VKG  + + L I N +IA  L  LP  K+HCS++  + ++AAV +Y  +
Sbjct:   37 DRLRLTLKVDPETDVILDAGFQTFGCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGE 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.741e-15
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 285
            D  R+ I V+ E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   43 DALRLHIKVEVESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.741e-15
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 285
            D  R+ I V+ E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   43 DALRLHIKVEVESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_KLEPN (Nitrogen fixation protein nifU OS=Klebsiella pneumoniae GN=nifU PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.289e-14
Identity = 38/88 (43.18%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D  R+++ VD ++  I +A F+TFGCGSAIASSS  TE + G  + E   I N +IA +L  LPP K+HCS++ ++A++AA+ ++  +
Sbjct:   37 DALRLMLRVDPQSEIIEEAGFQTFGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124          
BLAST of FE659176 vs. ExPASy Swiss-Prot
Match: NIFU_AQUAE (NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.780e-13
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   34 DVSRVIIVVDDETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 294
            D     I V+ E   I D  FKTFGCGSAIA SS+ TE VKGK +Q  L++   +I + L  LPP K+HC+ L  + +  A+KDY  K
Sbjct:   38 DAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMK 125          
The following BLAST results are available for this feature:
BLAST of FE659176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISU1_ENCCU5.055e-2365.48Iron sulfur cluster assembly protein 1 OS=Encephal... [more]
NIFU_AZOVI2.870e-1852.27Nitrogen fixation protein nifU OS=Azotobacter vine... [more]
NIFU_AZOCH7.817e-1648.86Nitrogen fixation protein nifU OS=Azotobacter chro... [more]
NIFU_ANASP1.741e-1547.06Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ1.741e-1547.06Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NIFU_KLEPN4.289e-1443.18Nitrogen fixation protein nifU OS=Klebsiella pneum... [more]
NIFU_AQUAE2.780e-1346.59NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1... [more]

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Properties
Property NameValue
Genbank description50 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659176 ID=FE659176; Name=FE659176; organism=Citrus sinensis; type=EST; length=296bp
ACCGACTGTGGCATCGTTCTTCTCGAAGGACCCGACGTTTCGCGGGTTAT
TATAGTGGTCGATGACGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGA
CCTTTGGCTGTGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGG
GTGAAAGGGAAGCAGATGCAGGAAGTCTTGTCCATTAAAAACACGGAAAT
TGCAAAACATCTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTG
CTGAAGATGCTATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACG
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