FE659175

Overview
NameFE659175
Unique NameFE659175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2163 contig Csv1_Contig2163:291..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S_SCHPO (AP-2 complex subunit sigma OS=Schizosaccharomyces pombe GN=aps2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.883e-26
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K+VY+RYA LYFC CVD  DN+L ILE+IH +VEILD +FG+VCELDLIFNF+K   ILDEI++ GE+ ES+KK+V   I A + L
Sbjct:   57 KLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERIEALEKL 142          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S_ASPFU (AP-2 complex subunit sigma OS=Aspergillus fumigatus GN=aps2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.329e-26
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K+VY+RYA L+FC+CVD  DNEL  LE IH +VE+LD++FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:   59 KIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 144          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S_NEUCR (AP-2 complex subunit sigma OS=Neurospora crassa GN=aps-2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.421e-25
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            KVVY+RYA L+FC CVD  DNEL  LE IH +VE+LD +FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:   57 KVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 142          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S_GIBZE (AP-2 complex subunit sigma OS=Gibberella zeae GN=APS2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.421e-25
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K+VY+RYA L+FC CVD  DNEL  LE IH +VE+LD +FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:   57 KIVYRRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 142          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S_EMENI (AP-2 complex subunit sigma OS=Emericella nidulans GN=aps2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.421e-25
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K+VY+RYA L+FC CVD  DNEL  LE IH +VE+LD++FG+VCELDL+FNF+K Y ILDE+ +AGE++E+SK+ V   +   D L
Sbjct:   59 KIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKL 144          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S_DICDI (AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.737e-23
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            ++VY+RYA L+F +CVD  DNEL  LE IH +VE+LD YFG+VCELDL+FNF+K Y I+DE+ +AGEL E SK  + + +   D+L
Sbjct:   56 RIVYRRYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLAGELMEPSKHVILQRMEFLDNL 141          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S1_RAT (AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.962e-23
Identity = 45/86 (52.33%), Postives = 66/86 (76.74%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K++Y+RYA LYFC+CVD  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:   56 KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S1_PONAB (AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.962e-23
Identity = 45/86 (52.33%), Postives = 66/86 (76.74%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K++Y+RYA LYFC+CVD  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:   56 KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S1_MOUSE (AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.962e-23
Identity = 45/86 (52.33%), Postives = 66/86 (76.74%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K++Y+RYA LYFC+CVD  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:   56 KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP2S1_HUMAN (AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.962e-23
Identity = 45/86 (52.33%), Postives = 66/86 (76.74%), Query Frame = -2
Query:   69 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSL 326
            K++Y+RYA LYFC+CVD  DN L  LE IH++VE+L+ YF +VCELDL+FNF+K Y ++DE+ +AGE++E+S+  V + +    SL
Sbjct:   56 KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSL 141          
The following BLAST results are available for this feature:
BLAST of FE659175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP2S_SCHPO4.883e-2662.79AP-2 complex subunit sigma OS=Schizosaccharomyces ... [more]
AP2S_ASPFU8.329e-2658.14AP-2 complex subunit sigma OS=Aspergillus fumigatu... [more]
AP2S_NEUCR1.421e-2559.30AP-2 complex subunit sigma OS=Neurospora crassa GN... [more]
AP2S_GIBZE1.421e-2558.14AP-2 complex subunit sigma OS=Gibberella zeae GN=A... [more]
AP2S_EMENI1.421e-2558.14AP-2 complex subunit sigma OS=Emericella nidulans ... [more]
AP2S_DICDI1.737e-2355.81AP-2 complex subunit sigma OS=Dictyostelium discoi... [more]
AP2S1_RAT2.962e-2352.33AP-2 complex subunit sigma OS=Rattus norvegicus GN... [more]
AP2S1_PONAB2.962e-2352.33AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S... [more]
AP2S1_MOUSE2.962e-2352.33AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s... [more]
AP2S1_HUMAN2.962e-2352.33AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S... [more]

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Properties
Property NameValue
Genbank description47 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659175 ID=FE659175; Name=FE659175; organism=Citrus sinensis; type=EST; length=327bp
ACATCCTACCTTGTGGCCTGTGCGATTATATTACTTATTGAACTAGCTTG
CTCTTTTGCAGTCTCCACCAGTGAATCCTGTGCAGCTATTAGCCGTGCGA
CTGTTTTCTTGCTGGACTCTTGAAGTTCGCCAGCAATCAAGATCTCATCC
AATATGTAATAAGCCTTGTGAAAGTTGAAGATGAGGTCCAACTCACAAAC
ACTGCCAAAGTATCTGTCAAGAATCTCAACATAATGATGAATTATTTCAA
GGATCTCTAACTCATTGTCTTCCTGATCAACGCACATGCAGAAGTATAGA
CTAGCATATCTTTTATAGACAACCTTG
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