FE659124

Overview
NameFE659124
Unique NameFE659124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10582 contig Csv1_Contig10582:720..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: RSH1_MAIZE (Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 55/163 (33.74%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   46 EAVMGCREIENTLQALTG--------VSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            EA+   + +E  L  ++G        +SL +G    +   EDD+      D +  ++          P E +    ++   ELK +L + +   +  +R+E  +K++ GKLP +    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  169 EAMEFLKRVEAQLDCISGGGGSSSARLSLADGKSEGVGSSEDDM------DPNGREND---------PPEIDPRAEDK---ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 313          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  262 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            ++LK  L + F SRI  ++ E  +K++ GKLP +    L  WW  H KWPYPTE DK  L + TGL  KQINNWFINQRKR+W
Sbjct:  223 RDLKDRLLRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHW 305          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.217e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  262 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            +ELK +L + +   +  +++E ++KR+ GKLP +    L  WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  262 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 344          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.217e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  262 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            +ELK +L + +   +  +++E ++KR+ GKLP +    L  WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  261 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 343          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.217e-20
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  262 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            +ELK  L + +   +  +++E+ +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  279 RELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 361          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.194e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  262 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            +ELK +L + +   +  +++E ++KR+ GKLP +    L  WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  236 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 318          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.194e-20
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  265 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            ELK +L + +   +  +R+E  +K++ GKLP +    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHW 82          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  262 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            ++LK +L + +   +  +++E ++KR+ GKLP +    L  WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  260 RDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 342          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  136 DDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            DD      + S D+  +   D+   G  LP  T     ++   ELK  L   +   +  +  E+ +K++ GKLP D    L  WWQ H +WPYP+E +KA L E TGL  KQINNWFINQRKR+W
Sbjct:  162 DDNGSEGGNSSEDEQEAGGGDMASAG--LPEITSPCAEDK---ELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHW 281          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.603e-19
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  265 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 510
            +LK  L   +   +  +  E+ RK++ GKLP D    L  WWQ H +WPYP+E +KA L E TGL+ KQINNWFINQRKR+W
Sbjct:    4 DLKNRLLNKYSGYLSSLWRELSRKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHW 85          
The following BLAST results are available for this feature:
BLAST of FE659124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RSH1_MAIZE1.893e-2033.74Homeobox protein rough sheath 1 OS=Zea mays GN=RS1... [more]
KNAT6_ARATH1.893e-2053.01Homeobox protein knotted-1-like 6 OS=Arabidopsis t... [more]
STM_BRAOL4.217e-2049.40Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
STM_ARATH4.217e-2049.40Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
KNAP1_MALDO4.217e-2048.19Homeobox protein knotted-1-like 1 OS=Malus domesti... [more]
LET6_SOLLC7.194e-2049.40Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
KNOX4_MAIZE7.194e-2050.00Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]
HSBH1_SOYBN9.395e-2048.19Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]
KNOS4_ORYSJ1.227e-1940.80Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]
KNX10_MAIZE1.603e-1951.22Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]

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Properties
Property NameValue
Genbank descriptionC63 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659124 ID=FE659124; Name=FE659124; organism=Citrus sinensis; type=EST; length=592bp
ACTTTCAAAGAGCAGCTTCAGCAGCACGTCAGAGTCCATGCCGTTGAAGC
TGTCATGGGCTGCCGTGAAATTGAGAATACTTTGCAAGCTCTCACCGGAG
TATCATTGGGTGAAGGGACAGGCGCAACAATGTCTGACGATGAGGATGAC
CTACATATGGATTTCTCTCTTGATCAATCTGCTTCTGATAGTCATGATTT
GATGGGTTTTGGTCCATTACTTCCTACTGAAACTGAAAGGTCTCTTATGG
AAAGAGTTAGACAGGAGTTGAAGATTGAACTGAAGCAGGGTTTTAAATCA
AGAATTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAGGGCCGGAAA
ATTGCCCGGTGACACAACTTCAGTGCTCAAGACTTGGTGGCAGCAACACT
CCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTAGTGGAGGAG
ACAGGCTTGCAACTAAAGCAAATCAACAACTGGTTCATCAACCAGAGGAA
GCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAAAGTCAAAGC
GCAAAAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTGGGG
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