FE659079

Overview
NameFE659079
Unique NameFE659079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.040e-32
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV Y+R
Sbjct:   82 GNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRR 178          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.040e-32
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNL+ QGYG  TAALSTALFN+G +CG+CYEI C  DP+WCLPG++ +TATNFC            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV Y+R
Sbjct:   76 GNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRR 172          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.480e-32
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYG  TAALSTALF+ GLSCG+C+E+ CVNDP+WC+ G +I+VTATNFC          GG C+PP  HFDLSQP+++ IA Y++G++PV Y+R
Sbjct:   62 GNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFC--------PPGGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRR 153          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.946e-31
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYS GYGT+TAALSTALFNNG SCG+C+E++C      CL GT+ VTATN C          GGWCNPP+ HFD+++P F  IAQ RAGVVPV Y+R
Sbjct:   51 GNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRR 148          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.025e-31
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY+ GY TNTAALSTALFN+G SCG CY+I C     P+WCL G +I +TATNFC          GGWCNPP+ HFD++QP F  IA+Y+AG+VP+ YK+
Sbjct:   52 GNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKK 153          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.563e-31
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+R
Sbjct:   63 GNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQR 164          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.563e-31
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+R
Sbjct:   76 GDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQR 177          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.462e-30
Identity = 61/101 (60.40%), Postives = 72/101 (71.29%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+LY  GYGT TAALSTALFN G SCG+C+ I C     +WC PGT I VTATNFC          GGWCNPP++HFD+SQP ++ IA YRAG+VPV Y+R
Sbjct:   49 GDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRR 149          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.494e-30
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 2
Query:    5 NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            +LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ VTATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+R
Sbjct:   75 DLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQR 175          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.494e-30
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY+QGYGT TAALSTALFN+GL+CG CY++ C    D  WC PG ++ +TATNFC          GGWCNPP+ HFD++QP ++ I  YR G++PV Y+R
Sbjct:   58 GNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQR 159          
The following BLAST results are available for this feature:
BLAST of FE659079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP26_ARATH2.040e-3261.62Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH2.040e-3261.62Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXPA5_ARATH3.480e-3261.00Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP11_ORYSJ2.946e-3161.62Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH5.025e-3158.82Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP23_ORYSJ6.563e-3157.84Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ6.563e-3157.84Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.462e-3060.40Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ORYSJ2.494e-3058.42Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ2.494e-3055.88Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC18 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659079 ID=FE659079; Name=FE659079; organism=Citrus sinensis; type=EST; length=299bp
TGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCA
CGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAG
TGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGTCACAGC
TACCAATTTTTGCCCACCGAACAACGCCCTCCCCAACAATGCAGGCGGTT
GGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAA
CACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGG
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