EY720600

Overview
NameEY720600
Unique NameEY720600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.409e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  110 IGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEY 328
            IGHVD+GKSTT G L+   G ID ++I R  KEA +     F++A V+D L  ERER +TID+   KF + +Y
Sbjct:   13 IGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKY 85          

HSP 2 Score: 25.7942 bits (55), Expect = 1.409e-13
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            V+ PG R + KNMITG S
Sbjct:   90 VDCPGHRDFIKNMITGAS 107          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.409e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  110 IGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEY 328
            IGHVD+GKSTT G L+   G ID ++I R  KEA +     F++A V+D L  ERER +TID+   KF + +Y
Sbjct:   13 IGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKY 85          

HSP 2 Score: 25.7942 bits (55), Expect = 1.409e-13
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            V+ PG R + KNMITG S
Sbjct:   90 VDCPGHRDFIKNMITGAS 107          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.136e-12
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  110 IGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVL 304
            IGHVDSGKSTT G L Y+LG +DKR ++++EKEAA  N  +F  A + D+  AER+R ITI   L
Sbjct:   52 IGHVDSGKSTTVGMLSYQLGAVDKREMEKYEKEAALNNKETFYLAYLTDKTDAERKRGITITTTL 116          

HSP 2 Score: 23.0978 bits (48), Expect = 1.136e-12
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            ++ PG + + KNM+TG S
Sbjct:  129 LDCPGHKDFVKNMVTGAS 146          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.465e-12
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L VIGHVD+GKST  G L+Y+ G +D++  K  E+ A  M    F +A +LD    ERER +TI+     FE+ + + T
Sbjct:   20 LAVIGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFIT 98          

HSP 2 Score: 23.0978 bits (48), Expect = 5.465e-12
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            ++ PG R + KNMI G S
Sbjct:  100 IDLPGHRDFIKNMIVGAS 117          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.212e-12
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L V+GHVD+GKST  G L+Y+ G +D++  K  E+ A  M    F +A +LD    ERER +TI+     FE+ + + T
Sbjct:   20 LAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETQKLFIT 98          

HSP 2 Score: 23.0978 bits (48), Expect = 9.212e-12
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            ++ PG R + KNMI G S
Sbjct:  100 IDLPGHRDFVKNMIVGAS 117          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.196e-11
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L V+GHVD+GKST  G L+Y+ G +D++ +K  E+ A  +    F +A +LD    ERER +TI+     FE+ + + T
Sbjct:   20 LAVVGHVDNGKSTLVGRLLYETGYVDEKALKEIEEMAKKIGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFIT 98          

HSP 2 Score: 23.0978 bits (48), Expect = 1.196e-11
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            ++ PG R + KNMI G S
Sbjct:  100 IDLPGHRDFVKNMIVGAS 117          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.553e-11
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L V+GHVD+GKST  G L+Y+ G +D++  K  E+ A  M    F +A +LD    ERER +TI+     FE+ + + T
Sbjct:   20 LAVVGHVDNGKSTLVGRLLYETGYVDEKGFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETNKLFIT 98          

HSP 2 Score: 23.0978 bits (48), Expect = 1.553e-11
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  342 VEAPGRRQWRKNMITGNS 395
            ++ PG R + KNMI G S
Sbjct:  100 IDLPGHRDFVKNMIVGAS 117          
BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 6.213e-11
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFES 319
            L+V GHVDSGKST  G ++++LG I+ R +++   EAA+    SF YA +LD    ER R +T+D+    FES
Sbjct:  180 LVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252          
The following BLAST results are available for this feature:
BLAST of EY720600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_METM71.409e-1347.95Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM61.409e-1347.95Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_ENCCU1.136e-1255.38Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
EF1A_PYRIL5.465e-1241.77Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRCJ9.212e-1240.51Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAE1.196e-1139.24Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_PYRAR1.553e-1140.51Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
HBS1_SCHPO6.213e-1145.21Elongation factor 1 alpha-like protein OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-G02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720600 ID=EY720600; Name=EY720600; organism=Citrus sinensis; type=EST; length=953bp
CACGCGTCCGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATA
AGGTTTTTTCTAGATGGGCATGATGGGTAAGGAGAAGACTCACATCAACA
TTGATGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACA
CTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCAAGAGGTTCG
AAAAGGAAGCTGCTGATATGAACGATAGGTCATTCAAATACGCCTGCGTG
CTCGACGAGCTCCATGCTGAGCGTGAACGTGCTATTACCATTGATATTGT
CTTGTGGAAGTTCGAGAGCACCGAGTACTACTGGACGCGGCGTTGAGGCT
CCTGGACGTCGGCAGTGGAGGAAGAACATGATTACCGGTAACTCAACAGA
CTGACTGGAACATCCTTGTTCGTTTATTCTTACTTTCAGTGGTGGGGAAG
CGGGGGACAGGGAGGGATGGAGGCGAGCGTGGAGGGTGTGGGTTGGCGCG
TCGGTGATGGGGGGGAGCGTGTCGTTGCGCGGGGGGGGGGCAGGGTGGGG
GCCCGCGGAGGTGGGCGGGGGTGGGGGGGCGGAGCGGTGGCGGGCCGGGC
GGGGGCGGATGCCGGGCGGGGGGGCGGGGGTCCTGGGGGGGCGGGGGAGG
AGGGGGGGTGGGTGGGGGAGGGAGCGCGGGGGGGGGGGGGGTGGCGGTGG
GCGGGGGAGGGTGGTGGGGGAGAGTGGGGGGCGGGCGGTGGCGGAGGCAC
GGAGAGGGGGAGAGGGACGGTGAGGCGAGGTGGGTTTGAGTGGGAGGGCC
GCGTGGCGGGGGAGGGTTCGCAGGGGGGGCGGTGGGTGGGAGAGGGGGGG
TTGCGTTGAGAGGGAGGAGGGTGGAGGGAGGGGGGTGGGGGGGATGGGGG
TGAGGGGGGCGAGGCGGGGAGGCGGCGGGGGGTGGGGTGCGGGGGGGCGG
GGG
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