EY720600 | Citrus Genome Database

Overview


Name	EY720600
Unique Name	EY720600
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	953

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.436e-30
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+++YY T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 3.436e-30
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAAG 119

HSP 3 Score: 20.7866 bits (42), Expect = 3.436e-30
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

The following BLAST results are available for this feature:

BLAST of EY720600 vs. ExPASy Swiss-Prot

BLAST of EY720600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
EF1A3_HUMAN	3.436e-30	75.95	Putative elongation factor 1-alpha-like 3 OS=Homo ...	[more]
EF1A1_RAT	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Rattus norvegicus G...	[more]
EF1A1_RABIT	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Oryctolagus cunicul...	[more]
EF1A1_PONAB	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF...	[more]
EF1A1_PANTR	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Pan troglodytes GN=...	[more]
EF1A1_MOUSE	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef...	[more]
EF1A1_HUMAN	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF...	[more]
EF1A1_HORSE	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Equus caballus GN=E...	[more]
EF1A1_FELCA	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1...	[more]
EF1A1_CRIGR	3.436e-30	75.95	Elongation factor 1-alpha 1 OS=Cricetulus griseus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-703-011-G02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720600 ID=EY720600; Name=EY720600; organism=Citrus sinensis; type=EST; length=953bp
CACGCGTCCGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATA
AGGTTTTTTCTAGATGGGCATGATGGGTAAGGAGAAGACTCACATCAACA
TTGATGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACA
CTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCAAGAGGTTCG
AAAAGGAAGCTGCTGATATGAACGATAGGTCATTCAAATACGCCTGCGTG
CTCGACGAGCTCCATGCTGAGCGTGAACGTGCTATTACCATTGATATTGT
CTTGTGGAAGTTCGAGAGCACCGAGTACTACTGGACGCGGCGTTGAGGCT
CCTGGACGTCGGCAGTGGAGGAAGAACATGATTACCGGTAACTCAACAGA
CTGACTGGAACATCCTTGTTCGTTTATTCTTACTTTCAGTGGTGGGGAAG
CGGGGGACAGGGAGGGATGGAGGCGAGCGTGGAGGGTGTGGGTTGGCGCG
TCGGTGATGGGGGGGAGCGTGTCGTTGCGCGGGGGGGGGGCAGGGTGGGG
GCCCGCGGAGGTGGGCGGGGGTGGGGGGGCGGAGCGGTGGCGGGCCGGGC
GGGGGCGGATGCCGGGCGGGGGGGCGGGGGTCCTGGGGGGGCGGGGGAGG
AGGGGGGGTGGGTGGGGGAGGGAGCGCGGGGGGGGGGGGGGTGGCGGTGG
GCGGGGGAGGGTGGTGGGGGAGAGTGGGGGGCGGGCGGTGGCGGAGGCAC
GGAGAGGGGGAGAGGGACGGTGAGGCGAGGTGGGTTTGAGTGGGAGGGCC
GCGTGGCGGGGGAGGGTTCGCAGGGGGGGCGGTGGGTGGGAGAGGGGGGG
TTGCGTTGAGAGGGAGGAGGGTGGAGGGAGGGGGGTGGGGGGGATGGGGG
TGAGGGGGGCGAGGCGGGGAGGCGGCGGGGGGTGGGGTGCGGGGGGGCGG
GGG