EY720600 | Citrus Genome Database

Overview


Name	EY720600
Unique Name	EY720600
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	953

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.884e-29
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L+VIGHVDSGKSTTTGHLIYKLGGIDKR I++FEKE+++M   SFKYA VLD+L AERER ITIDI LW+FE+ +Y++T
Sbjct:   10 LVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAWVLDKLKAERERGITIDIALWQFETPKYHYT 88

HSP 2 Score: 27.7202 bits (60), Expect = 1.884e-29
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNS 395
            ++APG R + KNMITG S
Sbjct:   90 IDAPGHRDFIKNMITGTS 107

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.451e-29
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 2

Query:   80 RRRLTSTLMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            + ++   ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+ ++Y T
Sbjct:    3 KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETGKFYIT 88

HSP 2 Score: 28.1054 bits (61), Expect = 2.451e-29
Identity = 13/34 (38.24%), Postives = 20/34 (58.82%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++   G
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCAVLIVAGG 119

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.452e-29
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 2

Query:   98 TLMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            +++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA+M   SFKYA VLD+L AERER ITIDI LWKFE+ +Y +T
Sbjct:    9 SIVVIGHVDSGKSTTTGHLIYKCGGIDKRAIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETDKYNFT 88

HSP 2 Score: 27.7202 bits (60), Expect = 2.452e-29
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNS 395
            ++APG R + KNMITG S
Sbjct:   90 IDAPGHRDFIKNMITGTS 107

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.453e-29
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L+VIGHVDSGKSTTTGHLIYK GGIDKRVI++FEKE+A+    SFKYA VLD+L AERER ITIDI LWKFE+ +Y++T
Sbjct:   11 LVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEQGKGSFKYAWVLDKLKAERERGITIDISLWKFETAKYHFT 89

HSP 2 Score: 27.7202 bits (60), Expect = 2.453e-29
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNS 395
            ++APG R + KNMITG S
Sbjct:   91 IDAPGHRDFIKNMITGTS 108

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.193e-29
Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            L+VIGHVDSGKSTTTGH+IYKLGGID+R I++FEKE+A+M   SFKYA VLD+L AERER ITIDI LWKFE+  Y++T
Sbjct:   10 LVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPRYFFT 88

HSP 2 Score: 26.5646 bits (57), Expect = 3.193e-29
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNS 395
            ++APG + + KNMITG S
Sbjct:   90 IDAPGHKDFIKNMITGTS 107

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.155e-29
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIY+ GGIDKR I++FEKEAA++   SFKYA VLD+L AERER ITIDI LWKFE+ +YY T
Sbjct:   11 VVVIGHVDSGKSTTTGHLIYQCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVT 89

HSP 2 Score: 28.4906 bits (62), Expect = 4.155e-29
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSG 443
            ++APG R + KNMITG S    +  C+ ++  +G
Sbjct:   91 IDAPGHRDFIKNMITGTS----QADCAILIIAAG 120

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.681e-29
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEA +M   SFKYA VLD+L AERER ITIDI LWKFE+ ++Y T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVT 88

HSP 2 Score: 27.7202 bits (60), Expect = 4.681e-29
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNS 395
            ++APG R + KNMITG S
Sbjct:   90 IDAPGHRDFIKNMITGTS 107

HSP 3 Score: 20.7866 bits (42), Expect = 4.681e-29
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.681e-29
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEA +M   SFKYA VLD+L AERER ITIDI LWKFE+ ++Y T
Sbjct:   10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKFYVT 88

HSP 2 Score: 27.7202 bits (60), Expect = 4.681e-29
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNS 395
            ++APG R + KNMITG S
Sbjct:   90 IDAPGHRDFIKNMITGTS 107

HSP 3 Score: 20.7866 bits (42), Expect = 4.681e-29
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1

Query:   79 KEKTHINI 102
            KEKTHINI
Sbjct:    3 KEKTHINI 10

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.410e-29
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA++   SFKYA VLD+L AERER ITIDI LWKFE+ +Y+ T
Sbjct:   10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 5.410e-29
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSGG 446
            ++APG R + KNMITG S    +  C+ IL  +GG
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCA-ILIIAGG 119

[Close]

BLAST of EY720600 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.410e-29
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 2

Query:  101 LMVIGHVDSGKSTTTGHLIYKLGGIDKRVIKRFEKEAADMNDRSFKYACVLDELHAERERAITIDIVLWKFESTEYYWT 337
            ++VIGHVDSGKSTTTGHLIYK GGIDKR I++FEKEAA++   SFKYA VLD+L AERER ITIDI LWKFE+ +Y+ T
Sbjct:   10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVT 88

HSP 2 Score: 28.4906 bits (62), Expect = 5.410e-29
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 3

Query:  342 VEAPGRRQWRKNMITGNSTD*LEHPCSFILTFSGG 446
            ++APG R + KNMITG S    +  C+ IL  +GG
Sbjct:   90 IDAPGHRDFIKNMITGTS----QADCA-ILIIAGG 119

The following BLAST results are available for this feature:

BLAST of EY720600 vs. ExPASy Swiss-Prot

BLAST of EY720600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
EF1A_CRYPV	1.884e-29	73.42	Elongation factor 1-alpha OS=Cryptosporidium parvu...	[more]
EF1A2_XENLA	2.451e-29	68.60	Elongation factor 1-alpha, oocyte form OS=Xenopus ...	[more]
EF1AC_PORPU	2.452e-29	73.75	Elongation factor 1-alpha C OS=Porphyra purpurea G...	[more]
EF1A_TETPY	2.453e-29	74.68	Elongation factor 1-alpha OS=Tetrahymena pyriformi...	[more]
EF1A_PLAFK	3.193e-29	73.42	Elongation factor 1-alpha OS=Plasmodium falciparum...	[more]
EF1A_TRIRE	4.155e-29	73.42	Elongation factor 1-alpha OS=Trichoderma reesei GN...	[more]
EF1A4_OSCTI	4.681e-29	73.42	Elongation factor 1-alpha 4 OS=Oscheius tipulae GN...	[more]
EF1A2_OSCTI	4.681e-29	73.42	Elongation factor 1-alpha 2 OS=Oscheius tipulae GN...	[more]
EF1A_PICGU	5.410e-29	73.42	Elongation factor 1-alpha OS=Pichia guilliermondii...	[more]
EF1A_CANAL	5.410e-29	73.42	Elongation factor 1-alpha OS=Candida albicans GN=T...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-703-011-G02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720600 ID=EY720600; Name=EY720600; organism=Citrus sinensis; type=EST; length=953bp
CACGCGTCCGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATA
AGGTTTTTTCTAGATGGGCATGATGGGTAAGGAGAAGACTCACATCAACA
TTGATGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACA
CTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCAAGAGGTTCG
AAAAGGAAGCTGCTGATATGAACGATAGGTCATTCAAATACGCCTGCGTG
CTCGACGAGCTCCATGCTGAGCGTGAACGTGCTATTACCATTGATATTGT
CTTGTGGAAGTTCGAGAGCACCGAGTACTACTGGACGCGGCGTTGAGGCT
CCTGGACGTCGGCAGTGGAGGAAGAACATGATTACCGGTAACTCAACAGA
CTGACTGGAACATCCTTGTTCGTTTATTCTTACTTTCAGTGGTGGGGAAG
CGGGGGACAGGGAGGGATGGAGGCGAGCGTGGAGGGTGTGGGTTGGCGCG
TCGGTGATGGGGGGGAGCGTGTCGTTGCGCGGGGGGGGGGCAGGGTGGGG
GCCCGCGGAGGTGGGCGGGGGTGGGGGGGCGGAGCGGTGGCGGGCCGGGC
GGGGGCGGATGCCGGGCGGGGGGGCGGGGGTCCTGGGGGGGCGGGGGAGG
AGGGGGGGTGGGTGGGGGAGGGAGCGCGGGGGGGGGGGGGGTGGCGGTGG
GCGGGGGAGGGTGGTGGGGGAGAGTGGGGGGCGGGCGGTGGCGGAGGCAC
GGAGAGGGGGAGAGGGACGGTGAGGCGAGGTGGGTTTGAGTGGGAGGGCC
GCGTGGCGGGGGAGGGTTCGCAGGGGGGGCGGTGGGTGGGAGAGGGGGGG
TTGCGTTGAGAGGGAGGAGGGTGGAGGGAGGGGGGTGGGGGGGATGGGGG
TGAGGGGGGCGAGGCGGGGAGGCGGCGGGGGGTGGGGTGCGGGGGGGCGG
GGG