EY720461

Overview
NameEY720461
Unique NameEY720461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROM1 (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain NATL1A) GN=ndhM PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.782e-17
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L C TRHVRI+ A ++      D      LTL +DP  EF W+D+S  KV  YF+ELV+      L++YTLR IGS LE +       GE+ YN   RV+N+SMG PR
Sbjct:    6 LKCTTRHVRIFTAVVENNDLILDNGH---LTLDIDPDNEFSWSDQSIKKVQDYFRELVELQADNELSDYTLRKIGSLLEDFIRKLLKDGELSYNPNSRVMNYSMGLPR 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PAUCH (NAD(P)H-quinone oxidoreductase subunit M, organellar chromatophore OS=Paulinella chromatophora GN=ndhM PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.782e-17
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L   TRH+RI+ A ++      D +Q   LTL +DP  EF+W   +  K+ + F+ELV+ + GA LT+YTLR IG++LE    S    GE+ YN   RVLN+SMG PR
Sbjct:    6 LKSTTRHIRIFTARVENNDLIADTSQ---LTLDIDPDNEFLWEQSTIEKIQSRFKELVECHTGADLTDYTLRRIGTELEGTLFSLLQAGELSYNPNARVLNYSMGLPR 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROM3 (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhM PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.328e-17
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L C TRHVRI+ A ++      D    D+LTL LDP  EF+WT+    ++   F ELV  + G  L++Y LR IGS+LE         G++ YN  CRVLN+SMG PR
Sbjct:    6 LKCTTRHVRIFTARVENNDLVPDP---DQLTLDLDPDNEFLWTESVIKEIQQRFAELVASHAGGELSDYNLRKIGSELEGTIRKLLQAGKLSYNPECRVLNYSMGLPR 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROMS (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain AS9601) GN=ndhM PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L   TRHVRI+ A +  E  +F     +KLTL LDP  EF+W ++S NK+   F EL+    G  L +Y LR IGS++E         G++ YN  CRV+N+SMG P+
Sbjct:    6 LKSTTRHVRIFTAEVVDEELKFHP---NKLTLDLDPDNEFIWNEDSLNKINEKFNELIKERAGKDLDDYELRKIGSEIEGLIKFLLQNGQLSYNPDCRVMNYSMGLPK 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROMM (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhM PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 48/108 (44.44%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L C TRHVRI+ A ++      D  Q   LTL LDP  EF+WT+    ++   F ELV  + G  L++Y LR IGS+LE         G++ YN  CRVLN+SMG PR
Sbjct:    6 LKCTTRHVRIFTARVENNDLVPDPNQ---LTLDLDPDNEFLWTESVTKEIQQRFAELVASHAGGELSDYNLRRIGSELEGTIRKLLQAGKLSYNPECRVLNYSMGLPR 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROM2 (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhM PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L   TRHVRI+ A +  +  +F     +KLTL LDP  EF+W ++S  K+   F+EL++   G  L +Y LR IGS++E         GE+ YN  CRV+N+SMG P+
Sbjct:    6 LKSTTRHVRIFTAEVVDKELQFHP---NKLTLDLDPDNEFIWNEDSLKKINQKFKELINERAGRDLDDYELRKIGSEVEGLIKFLLQNGELSYNPDCRVMNYSMGLPK 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROM9 (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhM PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L   TRHVRI+ A +     +F     +KLTL LDP  EF+W ++S N++   F EL+    G  L +Y LR IGS++E         G++ YN  CRV+N+SMG P+
Sbjct:    6 LKSTTRHVRIFTAEVVDNELQFHP---NKLTLDLDPDNEFIWNEDSLNEINKKFNELIKERAGKDLDDYELRKIGSEIEGLIKILLQNGQLSYNPDCRVMNYSMGLPK 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_PROM0 (NAD(P)H-quinone oxidoreductase subunit M OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhM PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.390e-16
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKP 723
            L   TRHVRI+ A +  E  +F     +KLTL LDP  EF+W ++S NK+   F  L+    G  L +Y LR IGS++E         G++ YN  CRV+N+SMG P
Sbjct:    6 LKSTTRHVRIFTAEVVDEELKFHP---NKLTLDLDPDNEFIWNEDSLNKINEKFNGLIKERAGKDLDDYELRKIGSEIEGLIKFLLQNGQLSYNPDCRVMNYSMGLP 109          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_SYNS3 (NAD(P)H-quinone oxidoreductase subunit M OS=Synechococcus sp. (strain CC9311) GN=ndhM PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L   TRHVR++ A ++      D  Q   LTL LDP  EF+W D     V   F+ELV+ + G  L +Y LR IGS+LE         G++ YN  CRVLN+SMG PR
Sbjct:    6 LKSTTRHVRLFTARVNEGRLVPDPNQ---LTLDLDPDNEFLWNDSCIQTVQQRFRELVEAHAGQPLNDYNLRRIGSELEGSIRQLLQAGQLSYNPDCRVLNYSMGLPR 110          
BLAST of EY720461 vs. ExPASy Swiss-Prot
Match: NDHM_SYNPW (NAD(P)H-quinone oxidoreductase subunit M OS=Synechococcus sp. (strain WH7803) GN=ndhM PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.179e-15
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  403 LSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYYGSCYMTGEIXYNMGCRVLNFSMGKPR 726
            L   TRH+R++ A ++      D  Q   LTL LDP  EF+WT+ +   +   F++LV+ Y G  L +Y LR IG++LE         G + YN  CRV+N+SMG PR
Sbjct:    6 LKSTTRHIRLFTARVENGDLVPDPEQ---LTLDLDPDNEFLWTEGTVTTIQTRFRDLVESYAGQPLNDYNLRRIGTELEGSIRELLQAGSLTYNPDCRVMNYSMGLPR 110          
The following BLAST results are available for this feature:
BLAST of EY720461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NDHM_PROM11.782e-1745.37NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_PAUCH1.782e-1744.44NAD(P)H-quinone oxidoreductase subunit M, organell... [more]
NDHM_PROM32.328e-1744.44NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_PROMS3.971e-1742.59NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_PROMM3.971e-1744.44NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_PROM21.155e-1641.67NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_PROM93.361e-1640.74NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_PROM04.390e-1642.06NAD(P)H-quinone oxidoreductase subunit M OS=Prochl... [more]
NDHM_SYNS35.733e-1643.52NAD(P)H-quinone oxidoreductase subunit M OS=Synech... [more]
NDHM_SYNPW2.179e-1539.81NAD(P)H-quinone oxidoreductase subunit M OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720461 ID=EY720461; Name=EY720461; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGCAGGCATCTTATCCTCCCCCCCTCCCAAATAAAAAGGAT
CCCAATTCCGTTAGTCTTTTGCCAAAAACTCCTAAGACTCGGGTGCTGAA
AAAGAGCTGTCCCAAGCTAAGCTACAAACACAAGTTATAAAATGGCCACA
ACTTCCATTAACATGGCTTCTGCAAAATTCTCAATGTTGGGATGGATTGG
AGGGAAAAGAGAGCTGAAAAAGAAAAGGGTAATATCGATTTCAGCTCAGC
AACAAGCTGAAGTTGAAGAGTCACAATCACAGCAAGTGAAGGAGAATGAA
AACCAAGCTCAGGTGAAGCAGCAGCAGACACCGTTGAGGCCAGTGGAGCC
GCAGACAAATGTAAGGAGCAAAAATATGAGCAGAGAATATGGAGGGCAGT
GGCTGAGCTGTGCCACGAGACATGTGAGGATTTACGCCGCATATATTGAT
CCTGAAACCTGGGAATTTGATCAAACACAGATGGATAAGCTCACTCTTAT
TTTGGATCCTACTAAAGAATTTGTGTGGACTGATGAGAGTTGCAATAAGG
TTTTTGCTTATTTCCAGGAGCTTGTTGATCACTATGAGGGCGCCCTGTTG
ACAGAATACACACTCCGGCTGATTGGTTCTGACTTAGAGCATTACTACGG
AAGCTGCTATATGACGGGGGAGATTNAATACAACATGGGATGCAGGGTAC
TAAACTTCAGCATGGGGAAGCCCCGTATCATGTTCAATAACAACGAACTC
CCAACTCAAGATGTTGCACAGTGATAGATTAGGGATCTTACAGAAATGGG
TAGTGAAATGAAAGCCAATATATCCAGATGTACCATGATGTTCCCAAACA
TTCAAAGATTTCTCCAAGTTGGCTGTGTCCTT
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