EY720450

Overview
NameEY720450
Unique NameEY720450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720450 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.597e-21
Identity = 61/197 (30.96%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  145 CIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG----GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWXRRE 723
            C+  S V  V+  +   WI  ++ G+A  +  ++++ + N+  G +LL   F+YDIFWVF +      +VM+ VA+   +     P+ L  P+     G     ++++G GDI++PG+ +A  LR+D  +KKN  + YF  +  AY  GL +T   +++   H QPALLY+VP  +G  + +   +GE+  ++   E
Sbjct:  165 CLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWVFGT------NVMVTVAKSFEA-----PIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHT-YFYTSFAAYIFGLGLTIFIMHIFK-HAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEE 348          
BLAST of EY720450 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 58/197 (29.44%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  145 CIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG----GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWXRRE 723
            C+  S +  V+  +   WI  ++ G+A  +  ++++ + N+  G +LL   F+YD+FWVF +      +VM+ VA+   +     P+ L  P+     G     ++++G GD+++PG+ +A  LR+D  +KKN  + YF  +  AY  GL +T   +++   H QPALLY+VP  +G  + +   +GE+  ++   E
Sbjct:  165 CLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGT------NVMVTVAKSFEA-----PIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHT-YFYTSFAAYIFGLGLTIFIMHIFK-HAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEE 348          
BLAST of EY720450 vs. ExPASy Swiss-Prot
Match: IMP2_CAEEL (Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 63/188 (33.51%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  196 WIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG-----GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSG-----------YFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLW 711
            WI  +I+G++  I  ++ + + + K G++LL   F YDIFWVF +       VM  VA+G  +     P+LL+ P+     G      +S++G GDI++PG+ +A   R+D+ + +                YFV  + AY  GL IT   ++      QPALLY+VP  L   L L   RGEL  LW
Sbjct:  269 WITNNIIGVSFSILGIERLHLASFKAGSLLLVGLFFYDIFWVFGT------DVMTSVAKGIDA-----PILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKA-AQPALLYLVPCCLFVPLLLAVIRGELSALW 444          
BLAST of EY720450 vs. ExPASy Swiss-Prot
Match: YL8H_SCHPO (Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe GN=SPAC25B8.17 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.605e-16
Identity = 63/181 (34.81%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  196 WIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDW------LMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWXRR 720
            W+  +IL  AL    + I+R+ +   G +LL   F YDI++VF ++      VM+ VA G       IP    +P+  +P    S++G GDI++PGL++A   R+D         +    S YF     AYGLGL +T  AL       QPALLY+ P  +   L     R ELKTL+  R
Sbjct:  112 WMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTE------VMVTVATG-----IDIPAKYVLPQFKNP-TRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYFKA-AQPALLYLSPACIVAPLLTAWYRDELKTLFSFR 279          
BLAST of EY720450 vs. ExPASy Swiss-Prot
Match: YKK0_YEAST (Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae GN=YKL100C PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 59/202 (29.21%), Postives = 98/202 (48.51%), Query Frame = 1
Query:  157 SVVWAVYRRIS-FAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGG---YSVIGFGDIILPGLIVAFSLRYD-W------------LMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLW 711
            S+V  VY  +S   W+  + + + + I  +  +++ NLK G ++L   F YDI +VF +       VM+ VA         IP+ L +P  F+       +S++G GDI LPG+ +A   +YD W             +  ++   YF+ AM +Y   L+   V+L++ +   QPALLYIVP  L + + +     + K  W
Sbjct:  315 SIVSTVYFYLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGT------DVMVTVATNL-----DIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFN-TAQPALLYIVPSLLISTILVACWNKDFKQFW 504          
The following BLAST results are available for this feature:
BLAST of EY720450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HM13_MOUSE2.597e-2130.96Minor histocompatibility antigen H13 OS=Mus muscul... [more]
HM13_HUMAN5.786e-2129.44Minor histocompatibility antigen H13 OS=Homo sapie... [more]
IMP2_CAEEL7.821e-1833.51Intramembrane protease 2 OS=Caenorhabditis elegans... [more]
YL8H_SCHPO5.605e-1634.81Probable intramembrane protease C25B8.17 OS=Schizo... [more]
YKK0_YEAST1.292e-1229.21Probable intramembrane protease YKL100C OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-F06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720450 ID=EY720450; Name=EY720450; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGGGTAGAGGGCCTACAGACCTGCGTGGTAGCATTGTTATC
ATGTTTCAGATGGTTTCAACATGCTGGAGACTCGTTTATTAAAGTACCAT
TCTTTGGAGCTGTCTCATATCTCACATTGGCTGTTTGTCCGTTCTGCATA
GCATTTTCTGTTGTTTGGGCTGTTTATCGCCGCATATCGTTTGCTTGGAT
AGGTCAAGACATCCTTGGAATTGCATTAATGATCACTGTTCTTCAGATTG
TTCGTGTGCCAAACCTCAAGGTTGGAACAGTTCTTCTCAGTTGTGCTTTC
TTGTACGATATCTTCTGGGTGTTTGTTTCTAAATGGTGGTTCCATGAGAG
TGTAATGATAGTGGTGGCTCGTGGTGACAGGAGTGGAGAAGATGGTATCC
CCATGTTATTAAAAATCCCACGATTGTTTGATCCTTGGGGTGGCTATAGT
GTAATTGGTTTTGGTGACATTATATTGCCAGGACTGATCGTGGCTTTTTC
ACTAAGGTATGATTGGCTGATGAAGAAAAATTTTCGTTCAGGATACTTTG
TTTGGGCAATGACTGCTTATGGTTTAGGTCTCCTGATTACGTATGTGGCA
TTAAACCTCATGGATGGACATGGCCAACCAGCATTGCTTTACATTGTTCC
ATTTACACTTGGAACCTTTTTGACCCTNGGGAAAAAGAGAGGTGAACTTA
AAACGCTGTGGANCAGAAGAGAACCANAGAGAGCCTGCCGCACATCAGCT
TCAATCTTCATGAGTATAATAAATAAGGGTGATTCTCACTGTAATTTACG
ATGGATTTAGTTGTTACACTCAAAAACTTCAATACTTTTGCCTGTTCACA
AATTATGGAAAGCATGTACAT
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