EY720285

Overview
NameEY720285
Unique NameEY720285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.974e-26
Identity = 57/162 (35.19%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  215 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAI 700
            V+ + + +ALN+ L + + ADPKV ++GE+VG   G +++++GL  ++G  RV+DTP+ EAG  G  +G A  G +PVVE     F     D I    AK     SG +++P+V R P+G   G    H +   A++A   GL++++P    DA  +++ AI
Sbjct:   14 VQSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSMPVVIRIPHGGHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAI 175          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.738e-25
Identity = 60/161 (37.27%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G  G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G        HS       A  PGLKV+ P    DA+GLL +AIR
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.471e-24
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  RGP G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.471e-24
Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  218 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-AVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            ++M + +A+N+ +D  M  D K  + GE+VG + G ++ + GL +KYG  RV +TP+ E G  G  +G A  G  P+ E    ++   A D I+N AAK  Y S GQ     +  R P GA    G  HSQ   +++   PGLKV+ P    +A+GLL A+IR
Sbjct:   47 QKMNLFQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIR 208          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIR 163          
The following BLAST results are available for this feature:
BLAST of EY720285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_LEIXX5.974e-2635.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST1.738e-2537.27Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC1.471e-2435.40Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_DICDI1.471e-2437.422-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_STAAW7.303e-2434.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU7.303e-2434.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS7.303e-2434.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR7.303e-2434.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN7.303e-2434.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM7.303e-2434.78Pyruvate dehydrogenase E1 component subunit beta O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720285 ID=EY720285; Name=EY720285; organism=Citrus sinensis; type=EST; length=871bp
CACCACGCGTCCGTAGAATTTCGTGCTCTTCGTGTGGGCTGTGCGTTGCA
ACTTTCAACCTATTTCCCTCTCCACGGCGATCGGATCGCTGATAACTTTC
ACTTCTGAGTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGG
AGGAGGTTCTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAA
ACTACTCATCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCT
GCTCTTGATGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGA
AGAGGTTGGGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGG
AGAAATATGGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGT
TTTACTGGGATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGT
GGAATTCATGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTA
ATTCTGCTGCAAAATCAAATTACATGTCTTCTGGCCAAATAGCGGTTCCT
ATCGTCTTCAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACA
CTCTCAATGTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTAC
TGAGCCCATACCGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATA
AGGGGTCCCGGATCCTGTTGTTTTTCTTGAAAATGAGTCGTAATATGGTG
AGTCATCCCCGGTATCACCTGAAAGTCTTGATTCCACTTGTGGCTTCCCG
TTGGGAAGCTAACATGGGAGAGAAGGAAGATGTACTATCACGCTTCCCCC
AAATGGGGGCTTCATCCACGC
back to top