EY720277

Overview
NameEY720277
Unique NameEY720277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_YERPS (Aminomethyltransferase OS=Yersinia pseudotuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.429e-27
Identity = 74/195 (37.95%), Postives = 104/195 (53.33%), Query Frame = 2
Query:  212 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  +DKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +  +G  P + I+     +  TGY G
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTG 191          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.429e-27
Identity = 74/195 (37.95%), Postives = 104/195 (53.33%), Query Frame = 2
Query:  212 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  +DKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +  +G  P + I+     +  TGY G
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTG 191          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_THET8 (Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.429e-27
Identity = 74/195 (37.95%), Postives = 108/195 (55.38%), Query Frame = 2
Query:  209 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            +KKT L++ H+  G +MV FAG+ +P+QY  SI+E  L  R+   +FDVSHM    ++GK+ + FL+     D   L  G    ++  NE GG +DD  + ++ ++   +VVNA    KDLAH+ A  K F  +  D S    +  +LLALQGP AA +LQ LT  DLS+    +     + G    L +TGY G
Sbjct:    1 MKKTPLYEAHLRLGARMVDFAGYLLPLQYT-SIVEEHLAVRRAVGVFDVSHMGEFLVRGKEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDIYLYRLGEEEYLMVVNAANIAKDLAHLQALAKGFRVELEDAS----ERTALLALQGPKAASLLQGLTDLDLSQKRKNDVFPARVAGRPARLARTGYTG 190          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_ALKOO (Aminomethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.429e-27
Identity = 74/201 (36.82%), Postives = 108/201 (53.73%), Query Frame = 2
Query:  209 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIK------GVSCLLTKTGYLG 793
            LK+T L D H   GGK+V FAGW M +Q++    E     R    +FDVSHM  + ++GKD   F++ LV  DVA L       T     +GG +DD ++ K   ++ YLVVNA   DKD A ++ +  ++  +  ++S    D  S +A+QGP A  ++Q LT  DLS     E P +  K      G +CL+++TGY G
Sbjct:    4 LKRTPLFDAHNRYGGKLVDFAGWEMSVQFEGLTAEHEA-VRNAAGIFDVSHMGEIEVRGKDAEAFVQYLVTNDVAALEDNQIVYTFMCYPDGGIVDDLLVYKFNKEYYYLVVNASNSDKDFAWMNENKGAYDVEIINIS----DSVSQVAVQGPKAEEIVQELTDTDLS-----EIPFFYFKNDVVINGANCLISRTGYTG 194          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_CLOB6 (Aminomethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.231e-26
Identity = 76/199 (38.19%), Postives = 107/199 (53.77%), Query Frame = 2
Query:  203 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS--KLYSGEFPIWDIKGVSCLLTKTGYLG 793
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM   ++KGKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  KDKD+  I  H   F  +  DVS    D  + LA QGPLA  +LQ +   DL   K +  +  +  + G  CL+++TGY G
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEATVKGKDAQKFVQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWILDHKGDFDVEIVDVS----DSIAQLAFQGPLAEEILQKIVDVDLQEIKFFKLKRDVL-VNGKKCLVSRTGYTG 194          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 76/199 (38.19%), Postives = 105/199 (52.76%), Query Frame = 2
Query:  203 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS--KLYSGEFPIWDIKGVSCLLTKTGYLG 793
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  KDKD+  I  H   F  +  DVS    D  + LALQGPLA  +LQ +   DL   K +     +  + G  CL+++TGY G
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIADVS----DSIAQLALQGPLAEEILQKIVDVDLQEIKFFKLRRDVL-VDGKKCLVSRTGYTG 194          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 73/195 (37.44%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  212 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  +DKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +  +G  P + I+     +  TGY G
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTG 191          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 73/195 (37.44%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  212 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  +DKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +  +G  P + I+     +  TGY G
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTG 191          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 73/195 (37.44%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  212 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  +DKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +  +G  P + I+     +  TGY G
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTG 191          
BLAST of EY720277 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 73/195 (37.44%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  212 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCKDKDLAHIDAHMKSFTAQGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYSGEFPIWDIKGVSCLLTKTGYLG 793
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  +DKDLA I  H + +      V   + D+ +L+A+QGP A   +  L   +  +  +G  P + I+     +  TGY G
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQAQQKVATLLTTEQQQAIAGMKPFFGIQTGDLFIATTGYTG 191          
The following BLAST results are available for this feature:
BLAST of EY720277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_YERPS9.429e-2737.95Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERP39.429e-2737.95Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_THET89.429e-2737.95Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_ALKOO9.429e-2736.82Aminomethyltransferase OS=Alkaliphilus oremlandii ... [more]
GCST_CLOB61.231e-2638.19Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_CLOBM2.100e-2638.19Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_YERPY2.743e-2637.44Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP2.743e-2637.44Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN2.743e-2637.44Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG2.743e-2637.44Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-C12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720277 ID=EY720277; Name=EY720277; organism=Citrus sinensis; type=EST; length=883bp
CACGCGTCCGGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTT
GTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATATCGAATAAA
ATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCACCCGTCGTTT
GGCTCGGGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATG
CTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGT
GGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGA
CTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTG
ATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCT
TTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGCCCCAGGAAC
TGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAATCGATGATT
CAGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCT
GGCTGCAAGGATAAGGATCTTGCTCACATTGACGCACATATGAAGAGTTT
CACAGCCCAAGGTGGGGATGTCTCCTGGCACATCCATGATGAGAGATCTC
TTCTTGCCCTTCAGGGCCCCCTTGCTGCCCCAGTTCTTCAACACCTGACC
AAAGATGACTTGAGCAAGTTATACTCCGGGGAATTCCCAATTTGGGATAT
CAAGGGTGTATCCTGCCTTCTCACTAAGACAGGGTACCTGGGTGAANGAT
GAGTTGAATCCTCTGTCCATCTGAGCGTGCCCTGGATCTTGCCAAACCAT
CCTGGAGAAATCCCAAGGAAAGGTGTCGTTCCC
back to top