EY720091

Overview
NameEY720091
Unique NameEY720091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.585e-37
Identity = 77/153 (50.33%), Postives = 108/153 (70.59%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPS-WSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRRSLGY YVN++++++  +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FI NLD  ID+KALHDT +AFG  LS    +    + KG       T      AI+ +NGM
Sbjct:   47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGM 199          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.071e-37
Identity = 76/154 (49.35%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  421 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + T SLYVGDL  +VT++ LY+ F+  G ++S+R+CRDL T  S  Y YVNF + ++A  AL+ +NF  + GKP+R+M+S RDPSLRKSG GNIF+ NLDK I++KAL+DT SAFG  LS          KG       T    ++AI+K+NGM
Sbjct:    8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGM 161          

HSP 2 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 46/165 (27.88%), Postives = 77/165 (46.67%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNG 879
            ++Y+ +   ++ D +L DLF + G  +SV+V  D S + S G+G+V+F   ++A +A++ +N   LNGK I                R     +   + +    N+++ NLD GID + L    S FGT  SA         KG       +     KA+ ++NG
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.704e-37
Identity = 77/150 (51.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSLGY Y+NF    +A RAL+ +NF  L G+PIR+M+S RDP LRKSG GNIFI NL+  ID+KAL+DT S FG  LS          +G       T    Q+AI  +NGM
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGM 161          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.704e-37
Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPS-WSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP+LRK+GAGNIFI NLD  ID+KALHDT +AFG  LS    +    + KG       T     +AI+ +NGM
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGM 211          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.704e-37
Identity = 74/150 (49.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            SLY+GDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSL Y Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP LRKSG GN+FI NLD+ ID+KAL+DT SAFG  LS          +G       T     +AI+ +NGM
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGM 161          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.613e-37
Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD  TRRSLGY YVNF NA +  RA+E LN++ +  +P R+M+S RDP+LR++G GNIFI NLD GID+KALHDT +AFG  LS           G       T    + AI+ +NGM
Sbjct:   47 TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGM 197          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.613e-37
Identity = 79/153 (51.63%), Postives = 103/153 (67.32%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAG-CYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVG+L+ +VT++ L++LFN +G V S+RVCRD  TRRSLGY YVNF N ++  +AL+ LN+T + G+P R+M+S RDPSLRK G GN+FI NLD  ID+KALHDT SAFG  LS         + KG       +      AIE +NGM
Sbjct:   79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.024e-37
Identity = 78/151 (51.66%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSW-SVKGLWXCXILT*GVCQKAIEKLNGM 882
            SLYVG+L+ +VT++ L+++FN +G V SVRVCRD  TRRSLGY YVNF N  +  RALE LN++P+  +P R+M+S RDP+LRK+GAGNI+I NLD  ID+KALHDT SAFG  LS       + + +G       +    + AI+ +NGM
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGM 197          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.342e-36
Identity = 76/153 (49.67%), Postives = 107/153 (69.93%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR-PSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FI NLD  ID+KALHDT +AFG  LS    +  + + KG       T     +AI+ +NGM
Sbjct:   60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGM 212          

HSP 2 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKG 816
            T++YV ++   VTD +   LF + G V S  + RD  T +S G+G+VNF++ ++A++A++ LN    +G+ +   R    H R+  LRKS               N++I NLD  +D + L    S FG   SA   R S +  G
Sbjct:  242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPG 386          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.100e-36
Identity = 75/153 (49.02%), Postives = 107/153 (69.93%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR-PSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN+++  +  +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FI NLD  ID+KALHDT +AFG  LS    +  + + KG       T     +AI+ +N M
Sbjct:   64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNM 216          
The following BLAST results are available for this feature:
BLAST of EY720091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PABP_PHANO1.585e-3750.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN2.071e-3749.35Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PAP1L_HUMAN2.704e-3751.33Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_NEUCR2.704e-3750.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA2.704e-3749.33Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP_USTMA4.613e-3750.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_SCHPO4.613e-3751.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YARLI6.024e-3751.66Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR1.342e-3649.67Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB5.100e-3649.02Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720091 ID=EY720091; Name=EY720091; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTACATTTCCAAAAAAGTGAAAAAAAAAAAAACCGACCAC
CAACTAGTTTACCTATCTCTCACGCGCCGCCATCGTCGCCGGCGCCAACA
ATTCGATTATCCTTCTTTCCGCTTCCCTCTCCTCCCCTTTCTCTATCTAT
CTGAGAGGCAAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTA
ATTCCGTCTTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTC
CCGAAGAATAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAA
AAAGAAAAAAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTC
TGTATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAG
GTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGAT
CTGGAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAAT
GGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGAT
CTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGG
GCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGT
TATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATA
TTTTCATTANGAACCTAGATAAGGGCATTGATCACAAAGCTTTGCACGAT
ACCNTTTCTGCTTTTGGGACATTTCTCTCTGCAGGNTGCTACAGACCCTC
ATGGTCAGTCAAAGGGCTATGGNATTGTANCATTTTGACATGAGGAGTCT
GCCAAAAAGCTATTGAGAAGTTGAACGGTATGTATTGATGACAG
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