EY720091

Overview
NameEY720091
Unique NameEY720091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 78/151 (51.66%), Postives = 101/151 (66.89%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAG-CYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            SLYVGDL  +V +S L+D F+  G V+S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  +  KPIR+M+S RDPSLR+SG GN+FI NLD+ ID+KA++DT SAFG  LS         + KG       T      +I+K+NGM
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 82/155 (52.90%), Postives = 107/155 (69.03%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSV----KGLWXCXILT*GVCQKAIEKLNGM 882
            +SLYVGDL+ +V +S L DLFNQ+  V ++RVCRDL T RSLGY YVNF+N ++A+RA+E LN+ P+  +PIR+M S+RDPS R SG GN+FI NLD  ID+KAL++T S+FGT LS    + +  V    KG            Q AI+KLNGM
Sbjct:   45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC---KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGM 195          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.699e-36
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAG-CYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            +SLY GDL+  VT++ L+DLF  +  VVSVRVCRD   RRSLGY Y+NFSN  +A RA+E LN+TPL  +PIR+M S+RDPS R SG GNIFI NLD  ID+KAL +T S+FGT LS       +   KG            Q AI+KLNGM
Sbjct:   49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGM 199          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.484e-35
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885
            SLYVGDL   VT++ LY+ F+  G ++S+R+CRD  TRRSLGY YVN+    +A RALE LNF  + G+P+R+M+S RDPSLRKSG GN+FI NL K ID+KAL++  SAFG  LS          KG            ++AI+ +NGM+
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMF 153          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 150.214 bits (378), Expect = 1.484e-35
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAG-CYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD  T+ SLGY YVNF++ +   +A+E LN+TP+ G+  R+M+S RDPSLRK G+GNIFI NL   ID+KAL+DT S FG  LS+      +   KG         G  ++AI+ LNGM
Sbjct:   37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGM 189          

HSP 2 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR-PSWSVKGLWXCXILT*GVCQKAIEKLN 876
            T+LYV ++ +  TD Q  +LF + G +VS  + +D   +   G+G+VN+   ++A +A+E LN + LNG+ + V                  ++R   + K    N+F+ NLD  +D + L +  + +GT  SA   R  +   KG       T     KAI + N
Sbjct:  219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK-GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.531e-35
Identity = 69/118 (58.47%), Postives = 93/118 (78.81%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLS 780
            + SLYVG+L+ +VT++ L+++FN +G V S+RVCRD  TRRSLGY YVN+ NA +  RALE LN++ + G+  R+M+S RDP+LRK+G GNIFI NLD+ ID+KALHDT +AFG  LS
Sbjct:   45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162          

HSP 2 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI-------------RVMYSHRDPSLR---KSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSV-KGLWXCXILT*GVCQKAIEKLNG 879
            T++Y+ +++  VTD++  DL    G  +SV + RD     S G+G+VN+ N + A +A++ LN   +NGK +              +  SH +  L    KS   N+++ NLD   D   L     AFGT  S+   R    V +G       +     KA+ ++NG
Sbjct:  227 TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNG 392          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.618e-35
Identity = 78/153 (50.98%), Postives = 101/153 (66.01%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAG-CYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD  T+ SLGY YVNF++   A  A+E LNFTP+ GK  R+M+S RDPSLRK GAGNIFI NL   ID+KAL+DT S FG  LS+      +   KG             +AI+ LNGM
Sbjct:   34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGM 186          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.273e-34
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLS 780
            SLYVG+LE  V+++ LYD+F+ +G V S+RVCRD  T  SLGY YVNF + +   +A+E LN+T + GKP R+M+S RDPSLRK G+GNI+I NL   ID+K+LH+T S FG  LS
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILS 154          

HSP 2 Score: 28.1054 bits (61), Expect = 1.273e-34
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  776 SLQXATDPHGQSKGYGIVXF*HEESAKKLLRS 871
            S + ATD +G S+G+G V F +E  A+  + +
Sbjct:  154 SCKVATDENGVSRGFGFVHFENESDARDAIEA 185          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.234e-34
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  430 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNG 879
            TSLYVGDL A+V +  L +LF+++G+  + S+ VCRD +T RSLGY YVNF N  +A RAL+ LN+T ++GKP R+M+S+RDP+ RK+  GNIF+ NL+KG+D+  L+DT S+FG  LS          KG       T    +KAIEK+NG
Sbjct:  184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNG 335          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.142e-34
Identity = 73/153 (47.71%), Postives = 100/153 (65.36%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPS-WSVKGLWXCXILT*GVCQKAIEKLNGM 882
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  +++SLGY YVN+   ++  +A+E LN+TP+ G+P R+M+S RDPS R+SG GNIFI NL   ID+KALHDT SAFG  LS           K        T    Q AIE +NGM
Sbjct:   66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGM 218          
The following BLAST results are available for this feature:
BLAST of EY720091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PABP_DROME6.661e-3651.66Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP5_ARATH6.661e-3652.90Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH8.699e-3654.61Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PAP1M_HUMAN1.484e-3549.67Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_YEAST1.484e-3549.67Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE2.531e-3558.47Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA9.618e-3550.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO1.273e-3456.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1B_DICDI6.234e-3449.34Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
PABP_LODEL8.142e-3447.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720091 ID=EY720091; Name=EY720091; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTACATTTCCAAAAAAGTGAAAAAAAAAAAAACCGACCAC
CAACTAGTTTACCTATCTCTCACGCGCCGCCATCGTCGCCGGCGCCAACA
ATTCGATTATCCTTCTTTCCGCTTCCCTCTCCTCCCCTTTCTCTATCTAT
CTGAGAGGCAAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTA
ATTCCGTCTTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTC
CCGAAGAATAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAA
AAAGAAAAAAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTC
TGTATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAG
GTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGAT
CTGGAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAAT
GGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGAT
CTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGG
GCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGT
TATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATA
TTTTCATTANGAACCTAGATAAGGGCATTGATCACAAAGCTTTGCACGAT
ACCNTTTCTGCTTTTGGGACATTTCTCTCTGCAGGNTGCTACAGACCCTC
ATGGTCAGTCAAAGGGCTATGGNATTGTANCATTTTGACATGAGGAGTCT
GCCAAAAAGCTATTGAGAAGTTGAACGGTATGTATTGATGACAG
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