EY720091

Overview
NameEY720091
Unique NameEY720091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27
Identity = 69/150 (46.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFI NLDK ID++AL    SAFG  LS          KG       +     +AI  +NG+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27
Identity = 69/150 (46.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D  LRKSG GNIFI NLDK ID++AL    SAFG  LS          KG       +     +AI  +NG+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.528e-26
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLS 780
            T SLYVGDL  +VT+  LYD F +   + SVR+C+D S+ RSL YGY NF + Q+A  A+E  N + LNGK IRVM+S R P  R++G GN+F+ NL + + +  L D    FG  +S
Sbjct:   23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140          

HSP 2 Score: 26.1794 bits (56), Expect = 8.528e-26
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  776 SLQXATDPHGQSKGYGIVXF*HEESAKKLLRS 871
            S + AT   G+S+GYG V F  E++A   +++
Sbjct:  140 SCKVATLEDGKSRGYGFVQFEQEDAAHAAIQT 171          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.338e-19
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  436 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKG---IDHKALHDTXSAFGTFLS 780
            L++GDL   VT+  L  +F +    VS +VC D  T++SLG+GY+NF + +EA +A+E LN+T +NGK IR+M S R+ + RK+   N+F  NL      +  +  +DT S +G  LS
Sbjct:   93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILS 210          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.188e-17
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSA 783
            ++Y+G+L+  VTDS L++L  Q G VV++ + RD       G+G+  F + Q+   A ++LN   L GKPIRV  + +D  +      N+F+ NLD  +D + L+DT SA G  + A
Sbjct:   12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128          

HSP 2 Score: 26.1794 bits (56), Expect = 3.188e-17
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  782 QXATDPHGQSKGYGIVXF*HEESA 853
            Q A D +G+SKGYG V +   E+A
Sbjct:  130 QVARDENGRSKGYGFVSYDSFETA 153          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885
            ++YVG L+  V++  L++LF Q G VV+  + +D  T +  GYG+V F + ++A  A++++N   L GKPIRV  +         GA NIFI NLD  ID K L+DT SAFG  L          + + KG       +      AIE +NG Y
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 166          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885
            ++YVG L+  V++  L++LF Q G VV+  + +D  T +  GYG+V F + ++A  A++++N   L GKPIRV  +         GA NIFI NLD  ID K L+DT SAFG  L          + + KG       +      AIE +NG Y
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 166          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885
            ++YVG L+  V++  L++LF Q G VV+  + +D  T +  GYG+V F + ++A  A++++N   L GKPIRV  +         GA NIFI NLD  ID K L+DT SAFG  L          + + KG       +      AIE +NG Y
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 166          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.044e-17
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885
            ++YVG L+  V++S L++L  Q G VVSV + +D  T    G+G+V F   ++A  A+++LN   L GKPI+V  +         GA NIF+ NLD  +D K L+DT SAFG  L          S + KG       +      A+E +NG +
Sbjct:   14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQF 166          
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.211e-14
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 1
Query:  433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLS 780
            ++YVG+L     DS L+ +F+ +G+V+SV++ +      S  + +V F N ++A RA+       L+ + IRVM     P       GNIF+ NL +    K L D  S FG  +S
Sbjct:   15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREYKHYELHNRQIRVMKKDERP----PETGNIFVKNLPEDFTGKDLDDAFSMFGEIVS 124          

HSP 2 Score: 35.8094 bits (81), Expect = 2.211e-14
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  776 SLQXATDPHGQSKGYGIVXF*HEESAKKLLRS 871
            S + AT  HG+SKGYG V F  +++AKK++++
Sbjct:  124 SCKVATTSHGKSKGYGFVQFKEKKAAKKVIKN 155          
The following BLAST results are available for this feature:
BLAST of EY720091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PABP5_HUMAN1.139e-2746.00Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.139e-2746.00Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABPX_ARATH8.528e-2647.46Probable polyadenylate-binding protein At2g36660 O... [more]
PES4_YEAST4.338e-1940.68Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]
SAP49_SCHPO3.188e-1736.75Spliceosome-associated protein 49 OS=Schizosacchar... [more]
SF3B4_RAT5.302e-1737.01Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE5.302e-1737.01Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN5.302e-1737.01Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SF3B4_CAEEL9.044e-1735.71Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
PABP_ENCCU2.211e-1432.76Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720091 ID=EY720091; Name=EY720091; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTACATTTCCAAAAAAGTGAAAAAAAAAAAAACCGACCAC
CAACTAGTTTACCTATCTCTCACGCGCCGCCATCGTCGCCGGCGCCAACA
ATTCGATTATCCTTCTTTCCGCTTCCCTCTCCTCCCCTTTCTCTATCTAT
CTGAGAGGCAAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTA
ATTCCGTCTTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTC
CCGAAGAATAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAA
AAAGAAAAAAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTC
TGTATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAG
GTGGGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGAT
CTGGAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAAT
GGGTCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGAT
CTCTCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGG
GCATTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGT
TATGTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATA
TTTTCATTANGAACCTAGATAAGGGCATTGATCACAAAGCTTTGCACGAT
ACCNTTTCTGCTTTTGGGACATTTCTCTCTGCAGGNTGCTACAGACCCTC
ATGGTCAGTCAAAGGGCTATGGNATTGTANCATTTTGACATGAGGAGTCT
GCCAAAAAGCTATTGAGAAGTTGAACGGTATGTATTGATGACAG
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