EY720091
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27 Identity = 69/150 (46.00%), Postives = 86/150 (57.33%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882 +LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+S D LRKSG GNIFI NLDK ID++AL SAFG LS KG + +AI +NG+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27 Identity = 69/150 (46.00%), Postives = 86/150 (57.33%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYRPSWSVKGLWXCXILT*GVCQKAIEKLNGM 882 +LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+S D LRKSG GNIFI NLDK ID++AL SAFG LS KG + +AI +NG+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGV 168
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 8.528e-26 Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1 Query: 427 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLS 780 T SLYVGDL +VT+ LYD F + + SVR+C+D S+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P R++G GN+F+ NL + + + L D FG +S Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140 HSP 2 Score: 26.1794 bits (56), Expect = 8.528e-26 Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 2 Query: 776 SLQXATDPHGQSKGYGIVXF*HEESAKKLLRS 871 S + AT G+S+GYG V F E++A +++ Sbjct: 140 SCKVATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 4.338e-19 Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 1 Query: 436 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKG---IDHKALHDTXSAFGTFLS 780 L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E LN+T +NGK IR+M S R+ + RK+ N+F NL + + +DT S +G LS Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILS 210
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.188e-17 Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSA 783 ++Y+G+L+ VTDS L++L Q G VV++ + RD G+G+ F + Q+ A ++LN L GKPIRV + +D + N+F+ NLD +D + L+DT SA G + A Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128 HSP 2 Score: 26.1794 bits (56), Expect = 3.188e-17 Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2 Query: 782 QXATDPHGQSKGYGIVXF*HEESA 853 Q A D +G+SKGYG V + E+A Sbjct: 130 QVARDENGRSKGYGFVSYDSFETA 153
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17 Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885 ++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI NLD ID K L+DT SAFG L + + KG + AIE +NG Y Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 166
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17 Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885 ++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI NLD ID K L+DT SAFG L + + KG + AIE +NG Y Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 166
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17 Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885 ++YVG L+ V++ L++LF Q G VV+ + +D T + GYG+V F + ++A A++++N L GKPIRV + GA NIFI NLD ID K L+DT SAFG L + + KG + AIE +NG Y Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 166
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 9.044e-17 Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLSAGCYR---PSWSVKGLWXCXILT*GVCQKAIEKLNGMY 885 ++YVG L+ V++S L++L Q G VVSV + +D T G+G+V F ++A A+++LN L GKPI+V + GA NIF+ NLD +D K L+DT SAFG L S + KG + A+E +NG + Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQF 166
BLAST of EY720091 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.211e-14 Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 1 Query: 433 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIXNLDKGIDHKALHDTXSAFGTFLS 780 ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V F N ++A RA+ L+ + IRVM P GNIF+ NL + K L D S FG +S Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREYKHYELHNRQIRVMKKDERP----PETGNIFVKNLPEDFTGKDLDDAFSMFGEIVS 124 HSP 2 Score: 35.8094 bits (81), Expect = 2.211e-14 Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 2 Query: 776 SLQXATDPHGQSKGYGIVXF*HEESAKKLLRS 871 S + AT HG+SKGYG V F +++AKK++++ Sbjct: 124 SCKVATTSHGKSKGYGFVQFKEKKAAKKVIKN 155 The following BLAST results are available for this feature:
BLAST of EY720091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >EY720091 ID=EY720091; Name=EY720091; organism=Citrus sinensis; type=EST; length=894bpback to top |