EY720023

Overview
NameEY720023
Unique NameEY720023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11145 contig Csv1_Contig11145:1..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B1_MOUSE (AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.352e-15
Identity = 64/254 (25.20%), Postives = 123/254 (48.43%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWEREPSAEXRLHLLXAVMKCFFRRHLRLK 798
            LQ  N AVV+A  +++ H++       +     I   L+ L+ S   E  Y VL ++  + +    +F    K FY +  +P+ +K LKLE+LT +ANE+N   ++ E   Y  + D   A  +I+ +G+ A    +      + L+  L    + V AE++V++K LL+  P    + I  +      ++  P A+A+++W++GE  + + + AP +L  + +++  E     +L +L    K +     + K
Sbjct:  309 LQSRNAAVVMAVAQLYWHIS------PKSEAGVISKSLVRLLRSNR-EVQYIVLQNIATMSIERKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVRSQDKQFAAATIQTIGRCATSISEFTETCFNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEIIRHMAKF-LDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSEDDL-VKLQILNLAAKLYLTNSKQTK 553          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B1_BOVIN (AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.012e-15
Identity = 61/229 (26.64%), Postives = 118/229 (51.53%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWERE 723
            LQ  N AVV+A  +++ H+        +     I   L+ L+ S S E  Y VL ++  + ++   +F    K FY +  + + +K LKLE+LT +ANE+N   ++ E   Y  + D   A  +I+ +G+ A    +V +  ++ L+  L    + V AE++V++K LL+  P    + I  +  +   ++  P A+A+++W++GE  + + + AP +L    +++  E
Sbjct:  308 LQSRNAAVVMAVAQLYWHIA------PKSEAGIISKSLVRLLRS-SREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDATMIKILKLEILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATSITEVSDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPMQHGEIIKHMAKL-LDSITVPVARASILWLIGENCERVPKIAPDVLRKTAKSFTSE 528          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B_DICDI (AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.601e-14
Identity = 66/262 (25.19%), Postives = 117/262 (44.66%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLR------------KYPQWSHDCIAVVGSISSQN---------------------VQEPKAKAALIWMLGEYSQDMQ-DAPYILESLTENWERE 723
            LQ  N AVV+A   ++ +   S+        +++   L+ ++ SG PE  Y  L+++  +V   P +F      F+   ++P Y  KLKLE+LT +A   N  +I+ E  EY  N D      +I+A+G  A    DV  + +  L+  L  +   V AE+++++K LL+            K  +   D      +IS  +                     +Q P A+A+++W++GEY   +   AP +   L +++  E
Sbjct:  305 LQSRNNAVVMAVSSLYFYCAPSIEA------QKVGKSLVRILRSG-PEVQYITLTNISTMVTLRPSMFEPHLSEFFIHSSDPEYSIKLKLEILTRLATPENIGKILKEFKEYVKNEDKKFVAATIQAIGSCASTVPDVTESCIYGLMSLLSNQSTVVVAESVIVLKRLLQLNATNEKLEKLEKEKEKEKDVKENQSTISKHSSSNNSIKYDNIILHLSKLLDTLQVPSARASIVWVIGEYCYRVPLVAPDVFRKLVKSFSDE 559          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B_ASHGO (AP-3 complex subunit beta OS=Ashbya gossypii GN=APL6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.423e-12
Identity = 63/257 (24.51%), Postives = 122/257 (47.47%), Query Frame = 1
Query:   22 MNLLEDRLQHANGAVVLATIKVFLHLTLSMTDVHQQVYERI-KAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTEL-----CEYAANVDIPIARE-SIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQ-DMQDAPYILESLTENWEREPSAEXRLHLLXAVMK 768
            ++ L+  L   N  V++A  K F  L+   T     + + + + P+ + + S   E    VL  + +     P +F S YK F+   ++   +   KL++L+ + ++SN   IV EL      E +A++ + ++   S+ A          ++ ++DR+     ++K+ VTA  + +++ L++K P      +  +  + S +   P AKA +IW+LGEY Q + +  P +L  L   + +E  A  RL +L    K
Sbjct:  301 LSSLKKLLHSPNAMVIVAVSKAFYQLSSPKTFKDSGIVDSLLRLPVSSYICSEIKE---LVLQSILVYCCSDPSLFRSHYKRFFLMPSDTENISIFKLKILSILVSDSNCKHIVNELKFVAGTEQSASILVEVSNTLSVCAQISSKWSSQIISWLLDRISSNTPIDKE-VTASQINVLRSLIQKDPIKHIATVVKLSKMLSNHDLLPSAKAPIIWLLGEYVQVEPRICPDVLRRLLPQFSKE-HAHVRLQILNLAAK 552          
The following BLAST results are available for this feature:
BLAST of EY720023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
AP3B1_MOUSE2.352e-1525.20AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3... [more]
AP3B1_BOVIN4.012e-1526.64AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1... [more]
AP3B_DICDI2.601e-1425.19AP-3 complex subunit beta OS=Dictyostelium discoid... [more]
AP3B_ASHGO5.423e-1224.51AP-3 complex subunit beta OS=Ashbya gossypii GN=AP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720023 ID=EY720023; Name=EY720023; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGATTTGACATCATGAATCTCCTTGAAGATAGACTTCAACA
TGCAAATGGTGCTGTTGTTTTAGCCACCATCAAAGTTTTTCTTCATTTGA
CCTTATCCATGACCGATGTTCATCAGCAGGTTTACGAACGCATCAAAGCT
CCTTTGCTAACCTTAGTGAGTTCTGGAAGTCCGGAGCAATCTTATGCAGT
TTTAAGCCACCTGCATATTTTGGTGATGCGTGCACCCTTTATATTTGCCT
CAGACTACAAACACTTTTATTGCCAGTATAATGAACCTTCTTATGTCAAG
AAGCTGAAGCTTGAAATGTTGACTGCAGTTGCAAATGAGAGCAATACATA
TGAAATTGTAACGGAATTATGCGAATATGCTGCGAATGTCGATATCCCCA
TTGCAAGAGAGTCTATTAGGGCTGTTGGAAAAATAGCTCTGCAGCAGTAT
GATGTGAATGCTATTGTTGATAGGCTTCTTCAGTTTCTGGAAATGGAAAA
GGACTATGTGACTGCTGAAGCTCTGGTGCTTGTAAAAGATTTACTTAGAA
AATATCCACAGTGGAGTCATGATTGCATTGCAGTTGTTGGGAGTATCAGC
AGCCAAAATGTTCAGGAACCCAAGGCGAAGGCAGCTCTTATATGGATGTT
GGGGGAATATTCTCAGGATATGCAAGATGCTCCTTACATTTTAGAAAGTT
TAACCGAAAATTGGGAAAGAGAGCCTTCAGCAGAGGNTCGTTTACATCTT
CTCANCGCTGTAATGAAGTGTTTTTTCAGAAGGCACCTGAGACTCAAAAA
GTCTTGGGAGCTGCTTTGGCTGCTGGTCTGGCTGATTTTCACCAGGATGT
CATGATAGGCCTTATTCTACATAGGCTTNNTGCATATATGTATCTGTAGC
AAAACGAGTTGTGACCTNTCAAAGCAGCTGNT
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