EY719780

Overview
NameEY719780
Unique NameEY719780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_THERP (Glucose-1-phosphate adenylyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 43/135 (31.85%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  132 DTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIK 524
            D  ++  +++  +    +ASMGIY+  ++++L+L     P A    DFG +VIP       RV  Y +DGYW+D+GT+++++ AN+ + +   P  + YD +  I+T+    PP+K+L+ A V  S++  GC+++
Sbjct:  171 DGWVVDFEEKPERPRSNLASMGIYLFRRNLLLDLFTRDHPDAPEFIDFGRDVIPYLIRTA-RVATYRFDGYWQDVGTVQSYWEANMALLEDE-PKLNLYDPNWRIHTRSEERPPAKILEGATVIRSLLSNGCIVE 303          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_THEAB (Glucose-1-phosphate adenylyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   78 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-DVTDSVIGEGCVI 521
            IIEF EKPK                     +    +AS+GIYV     +  +L +       ++DFG ++IP       RV A+ +DGYW+D+GTI +++ +NL +T +PIP F+ +D +  IYT  + +PP+ + D+  V +S+I EGC I
Sbjct:  173 IIEFQEKPK---------------------QPKSTLASLGIYVFQWSFIREVLIEDAKNDQSSHDFGKDIIPKIIQTE-RVFAFPFDGYWKDVGTIYSYWESNLELT-RPIPPFNIHDENWRIYTHSKEMPPAYIADSTKVKNSLISEGCEI 301          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_NITOC (Glucose-1-phosphate adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   78 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIGMRVQAYLYD-------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVI 521
            + EF+EKP+  Q    + D T+              ASMGIYV +   +   L    D F  ++DFG ++IP       RV A+ +        GYW D+GT++AF+NANL +     P+ + YD   PI+T    LPP+K +  +        DS++  GC+I
Sbjct:  185 VTEFTEKPEHPQPSPGRSDETL--------------ASMGIYVFNAAFLYEQLIKNADAFNSSHDFGKDIIPSILRSHYRVIAFPFSDVQGGDPGYWRDVGTVDAFWNANLELIGVS-PELNLYDEDWPIWTYQAQLPPAKFIFDNEDRRGMAVDSMVSGGCII 333          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC1_ALHEH (Glucose-1-phosphate adenylyltransferase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   78 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFPGANDFGSEVIPGATSIGMRVQAYLYD-------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 476
            ++ F+EKPK         D T +  + +RA     + SMGIYV  +D +  LLR+    F  + DFG +VIP A +   +VQAY +         YW D+GT++AF+ AN+ +  +  P+ + YD   PI+T    LPP+K +
Sbjct:  186 VLAFNEKPK---------DPTPMPGNPDRA-----LVSMGIYVFDRDYLFQLLREDAENFDSSRDFGKDVIPNAIA-NHKVQAYPFSDPVSGQQAYWRDVGTVDAFFQANMELIGED-PELNLYDEEWPIWTYQAQLPPAKFI 312          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_FERNB (Glucose-1-phosphate adenylyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 3
Query:   78 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS----KDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVI 521
            IIEF EKPK  +                       +AS+GIYV +    K+V++   +D     +DFG  +IP   S G +V AY ++GYW+D+GTI++++  NL +  +PIP F+ +D +   YT+   + P+ + +  +V +S+I EGC I
Sbjct:  173 IIEFQEKPKNPKSN---------------------LASLGIYVFTWNFIKEVLIEDSKDN-SSDHDFGKNIIPKILSTG-KVYAYPFEGYWQDVGTIQSYWETNLELV-RPIPPFNLHDPNWRFYTRSEEMNPAYISENGNVRNSIISEGCEI 301          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.896e-14
Identity = 43/131 (32.82%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  141 ILGLDDERAKEMPYIASMGIYVISKDVMLN-LLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVI 521
            I+  +++  +    +ASMG+Y+ + DV+   LL D+      +DFG  V+P     G R+ +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG GC I
Sbjct:  175 IIRFEEKPPRPESNLASMGVYIFNWDVLKEALLEDERDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIGNGCTI 304          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_DESHY (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 43/131 (32.82%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  141 ILGLDDERAKEMPYIASMGIYVISKDVMLN-LLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVI 521
            I+  +++  +    +ASMG+Y+   DV+   LL D+      +DFG  V+P     G R+ +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG GC I
Sbjct:  175 IIRFEEKPPRPESNLASMGVYIFKWDVLKEALLEDEQDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIGNGCTI 304          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_CLOCE (Glucose-1-phosphate adenylyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glgC PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.851e-14
Identity = 49/153 (32.03%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   78 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLN-LLRDK--FPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVI 521
            I EF EKPK  +                       +ASMG+Y+ +   +   L++D       NDFG  +IP     G  + AY Y GYW D+GTI+AF+ +N+ +  + +P F+ +D    IYT P  + P+  +   A V  S+I EGC +
Sbjct:  175 IYEFEEKPKNPKST---------------------LASMGVYIFTWSTLREYLIKDNECSDSVNDFGKNIIPAMLGDGKSMWAYQYSGYWRDVGTIQAFWESNMDLVSR-VPQFNLFDPEWRIYT-PNPVKPAHYIASSACVKKSIIAEGCSV 304          

HSP 2 Score: 21.557 bits (44), Expect = 3.851e-14
Identity = 7/13 (53.85%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  568 ISEGAIIEDTLLM 606
            I EGA+I+D+++M
Sbjct:  319 IEEGAVIQDSIIM 331          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_STRMU (Glucose-1-phosphate adenylyltransferase OS=Streptococcus mutans GN=glgC PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.864e-14
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 3
Query:   78 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVI 521
            I+EF EKP  EQ K+ K                   ASMGIY+ + D +  +L D        +DFG  VIP     G RV  Y ++GYW+D+GTIE+ + AN+    +   D    DRS  IY++    PP+ +  +A V DS++ +GC +
Sbjct:  174 IVEFEEKP--EQPKSTK-------------------ASMGIYIFNWDRLRTMLVDAEKNNIDMSDFGKNVIPAYLESGERVYTYNFNGYWKDVGTIESLWEANMEYIGED-NDLHSRDRSWKIYSKNLIAPPNFITEEAHVKDSLVVDGCFV 303          

HSP 2 Score: 22.7126 bits (47), Expect = 3.864e-14
Identity = 8/24 (33.33%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  535 IHHSVVGLRSCISEGAIIEDTLLM 606
            + HS++     + EGA I+D+ +M
Sbjct:  307 VEHSILSTNVQVKEGAQIKDSFIM 330          
BLAST of EY719780 vs. ExPASy Swiss-Prot
Match: GLGC_CLOTH (Glucose-1-phosphate adenylyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.206e-14
Identity = 41/118 (34.75%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  183 IASMGIYVISKDVMLN-LLRD--KFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVI 521
            +ASMG+Y+ + +V+   L+RD      A+DFG  +IP     G  + AY ++GYW D+GTI+A++ +N+ +  + +P+F+ +D +  IYT P  + P+  +     V  S++ EGC+I
Sbjct:  189 LASMGVYIFNWEVLKEYLIRDDQNEESAHDFGKNIIPMMLKEGRSMWAYKFNGYWRDVGTIQAYWESNMDLISR-VPEFNLFDPAWKIYT-PNPVKPAHYIGPTGSVKKSIVAEGCMI 304          
The following BLAST results are available for this feature:
BLAST of EY719780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
GLGC_THERP2.925e-1531.85Glucose-1-phosphate adenylyltransferase OS=Thermom... [more]
GLGC_THEAB4.990e-1534.21Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_NITOC4.990e-1532.32Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC1_ALHEH4.990e-1534.97Glucose-1-phosphate adenylyltransferase 1 OS=Alkal... [more]
GLGC_FERNB8.512e-1533.33Glucose-1-phosphate adenylyltransferase OS=Fervido... [more]
GLGC_DESHD1.896e-1432.82Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_DESHY2.477e-1432.82Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_CLOCE3.851e-1432.03Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_STRMU3.864e-1434.87Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_CLOTH7.206e-1434.75Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-106-G04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719780 ID=EY719780; Name=EY719780; organism=Citrus sinensis; type=EST; length=901bp
AATTTTGATTGGGAGAGAAGCTGGTGCGTTTTGAGTGAGTGTGTAATCCG
GTGACTGTAATCTGGTGCTTTTTGAGCATAATTGAATTTTCTGAGAAACC
AAAAGGAGAGCAACTTAAAGCTATGAAGGTTGATACCACCATATTAGGTC
TTGATGATGAGAGAGCTAAAGAGATGCCTTACATAGCAAGTATGGGTATT
TATGTCATCAGCAAAGATGTGATGTTAAATCTGCTAAGGGATAAATTTCC
TGGAGCTAATGATTTTGGAAGTGAAGTTATCCCTGGTGCAACTTCCATTG
GGATGAGAGTGCAAGCATATTTATATGATGGCTACTGGGAAGACATTGGA
ACAATTGAGGCTTTCTACAATGCGAATCTGGGGATCACCAAAAAGCCAAT
TCCGGATTTCAGCTTCTATGACCGTTCTGCTCCAATCTATACACAGCCTA
GATATCTACCTCCTTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTA
ATTGGTGAAGGCTGTGTGATTAAAGAATTGCAAAATTCACCATTCTGTTG
TTGGGCTTCGATCTTGCATATCAGAAGGTGCAATTATCGAAGATACTTTA
CTTATGGGAGCAGATAATTATGAGACGGATGCGGACAGGAAGGTTTTGGC
TGCAAAGGGTAGTGTTCCAATTTGGAATTGGCAAGAAATTCTCACATCAA
GAAAAGCAATAATCGAAAAAAAAGGCTCCAATTTGGGGAAAAAGGGGAAA
AATCGTCAAACATGGACAGGGGGGAAAAAAACCCCAAGGGGAAACAAAAG
GGGAAACTTTCCTTCAAAAAGGGGGGTTTGGTCCAAATAAATCAAGGGAG
GCCCTTGGGTTCCCCCGGGGGAAACCCTAAATTCTAAAACGGGGCGCTCC
T
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