EY719733

Overview
NameEY719733
Unique NameEY719733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.297e-22
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDF-VATTQSANFQSEIAKLRHDVEEYAKQFPTIG 349
            +KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L V+I+ +T     LK+F          Q  +  LR +VE +A  FP  G
Sbjct:  365 SKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.611e-22
Identity = 55/118 (46.61%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   14 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQS------EIAKLRHDVEEYAKQFPTIG 349
            GIDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + + AVKLA+ +KS+ +    KD  A T+ A+F+S      ++ KL ++V ++  Q+P  G
Sbjct:  381 GIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ-EPVDAKD--AKTRLAHFKSFCAESEQVTKLANEVADWVAQYPVPG 495          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.250e-21
Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQ------SEIAKLRHDVEEYAKQFPTIG 349
            N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  ++FA+VA + D AVKLA+ IKS+ +    KD  A ++ A+F+       ++ +L  +V ++  +FP  G
Sbjct:  380 NLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ-ESPDAKD--ARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 2
Query:   14 GIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 340
            G+DG+RVE +LE ++I  NKN VPGD SA+ PGG+R+GTPA+TSRGF E DF KVA F D AVKL  +I++    +  K KDF A   +++    I +L+ ++  ++  FP
Sbjct:  359 GVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANKQKDFKAKIATSDI-PRINELKQEIAAWSNTFP 468          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 340
            KG+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDFA++  + + AV++A  I+     +  +LKDF A  +      EIA+L  ++  + +++P
Sbjct:  357 KGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGT--DEIAQLAQEIYSWTEEYP 466          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-21
Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 2
Query:   17 IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKL---KDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 349
            +DG+RVE +L A++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  E+F++VA + D+AVKLA  +K+    TKL          +  N  SE+A L  ++ ++  Q+P  G
Sbjct:  375 VDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 49/112 (43.75%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 340
            KG+DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + D AVK A + +S    +  KLKDF A         ++A L+ ++ ++  ++P
Sbjct:  357 KGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVD--EIADQLAPLKKEIYDWTAEYP 466          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.252e-20
Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = 2
Query:    5 ENKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 340
            ++K IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF K+  + D AV  A +++S+      KLKDF       +   ++  +R ++ ++A  FP
Sbjct:  356 KDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDS--EKLKAVRDEIYQWAGSFP 467          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQF 337
            +GI GS++EK  +  HI  NKN V GD +A+ PGG+R+G PALTSRG  E+DF KV  F D  VK+++ I+S+  G K+ DF    ++     ++ ++R +V+E++ +F
Sbjct:  371 QGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKV-GKKMPDF---QRAIADNQDLKQIRQEVKEFSTKF 475          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 43/112 (38.39%), Postives = 73/112 (65.18%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 340
            KG+DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + + AV+ A +++        +LKDF A     +    +   + ++ ++A ++P
Sbjct:  357 KGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGS--DVLNTWKKEIYDWAGEYP 466          
The following BLAST results are available for this feature:
BLAST of EY719733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GLYC_RABIT4.297e-2249.14Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYM_ASHGO5.611e-2246.61Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA1.250e-2145.83Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR1.633e-2147.75Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYC_ASHGO1.633e-2143.75Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYM_YEAST2.132e-2145.61Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA3.637e-2143.75Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_CANAL5.252e-2042.98Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC2_DICDI4.446e-1942.20Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_YEAST3.764e-1838.39Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-106-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719733 ID=EY719733; Name=EY719733; organism=Citrus sinensis; type=EST; length=664bp
ATTTGAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAG
CTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATGTGTCGGCC
ATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACTTCTAGGGG
ATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGATGCTGCTG
TGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAGGAACAAAGTTGAAA
GATTTCGTGGCCACAACACAGTCCGCTAACTTCCAATCCGAGATTGCGAA
ACTTCGCCATGATGTTGAGGAGTATGCAAAGCAATTCCCCACAATTGGGT
TTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGAAAAACGCCACTGTA
CTAGAGTAGCGGAAGCCAGCCTGTATGAGCTTTTATTACACAGAGGCGAC
GAGGGATGAAATGTAACTTACGATGATGAGCCATGTATCAACTATCGACC
CTGTGATTTGGCGCTTTTATGAATACAATATACAGCAAACCTTGATTTAA
ATCACCATTAATGTATATAAAGTACTCTGTATTTACTGAGGCTTTTAAGA
AGCAAATAAACCTGCAATAAAACTAGAAGCGATATCTTTTTTCAAAAAAA
AAAAAAAAAAAAAA
back to top