EY719733

Overview
NameEY719733
Unique NameEY719733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 2
Query:   11 KGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 349
            K + G++ EK  +  +I  NKN V GD +A+ PGGIR+G+ ALTSRG  E DF K+A F D  V ++++I+    G KL DFV      N   E+  LR +VEE++ +F   G
Sbjct:  348 KELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRV-GKKLVDFVV---EINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  321 NKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  321 NKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387          
BLAST of EY719733 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    8 NKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 205
            NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  321 NKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387          
The following BLAST results are available for this feature:
BLAST of EY719733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GLYC1_DICDI5.435e-1742.48Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYA_CLOBM2.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBL2.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK2.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ2.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBH2.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB62.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB12.613e-1147.76Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOK54.457e-1150.75Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK14.457e-1150.75Serine hydroxymethyltransferase OS=Clostridium klu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-106-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719733 ID=EY719733; Name=EY719733; organism=Citrus sinensis; type=EST; length=664bp
ATTTGAAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAG
CTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATGTGTCGGCC
ATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACTTCTAGGGG
ATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGATGCTGCTG
TGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAGGAACAAAGTTGAAA
GATTTCGTGGCCACAACACAGTCCGCTAACTTCCAATCCGAGATTGCGAA
ACTTCGCCATGATGTTGAGGAGTATGCAAAGCAATTCCCCACAATTGGGT
TTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGAAAAACGCCACTGTA
CTAGAGTAGCGGAAGCCAGCCTGTATGAGCTTTTATTACACAGAGGCGAC
GAGGGATGAAATGTAACTTACGATGATGAGCCATGTATCAACTATCGACC
CTGTGATTTGGCGCTTTTATGAATACAATATACAGCAAACCTTGATTTAA
ATCACCATTAATGTATATAAAGTACTCTGTATTTACTGAGGCTTTTAAGA
AGCAAATAAACCTGCAATAAAACTAGAAGCGATATCTTTTTTCAAAAAAA
AAAAAAAAAAAAAA
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