EY719586

Overview
NameEY719586
Unique NameEY719586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1018
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.451e-46
Identity = 87/157 (55.41%), Postives = 107/157 (68.15%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   +KISA S YFE++PY+VN  TG IDYD LE+ A  FRPK+++ G SAY R  DY R R +AD  GA L+ DMAHISGL+A++   +PF Y  +VTTTTHKSLRGPR  MIF+R           +  +YD EDKINF+VFP   GG
Sbjct:  140 HLSHGYQTPQ-RKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLVAGTSAYCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEVIPSPFLYADVVTTTTHKSLRGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGG 295          

HSP 2 Score: 34.2686 bits (77), Expect = 2.451e-46
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I ALAVALKQA++P FK Y ++V
Sbjct:  299 HTITALAVALKQAASPEFKEYQQKV 323          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.193e-46
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHGY  S  K+ISATSI+FES+PYK+N  TG IDYD+L   A  F+P+LII G SAY R  DYAR R V D+  A LL DMAHISGLVAA+   +PF++  IVTTTTHK+LRG R+G+IFYR               Y FED+INFAVFPS  GG
Sbjct:  171 HLTHGYM-SDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGG 326          

HSP 2 Score: 34.2686 bits (77), Expect = 3.193e-46
Identity = 15/25 (60.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I A+AVALKQA TP F+ Y+ Q+
Sbjct:  330 HAIAAVAVALKQACTPMFREYSLQI 354          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 3.193e-46
Identity = 91/157 (57.96%), Postives = 110/157 (70.06%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHGY  S  K++SATSI+FES+PYK+N  TG IDY++L   A  FRP+LII G SAY R  DYAR R V D+  A LL DMAHISGLVAA+   +PF++  +VTTTTHK+LRG R+G+IFYR           +   Y FED+INFAVFPS  GG
Sbjct:  171 HLTHGYM-SDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGG 326          

HSP 2 Score: 34.6538 bits (78), Expect = 3.193e-46
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I A+AVALKQA TP F+ Y+ QV
Sbjct:  330 HAIAAVAVALKQACTPMFREYSLQV 354          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 4.161e-46
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHGY  S  K+ISATSI+FES+PYK+N  TG IDY++L   A  FRP+LII G SAY R  DYAR R V D+  A LL DMAHISGLVAA+   +PF++  IVTTTTHK+LRG R+G+IFYR               Y FED+INFAVFPS  GG
Sbjct:  171 HLTHGYM-SDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGG 326          

HSP 2 Score: 34.6538 bits (78), Expect = 4.161e-46
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I A+AVALKQA TP F+ Y+ QV
Sbjct:  330 HAIAAVAVALKQACTPMFREYSLQV 354          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 5.426e-46
Identity = 90/157 (57.32%), Postives = 104/157 (66.24%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HG+ T   K ISA S YF ++PY VN  TG IDYD LE+ A+ FRPK+I+ G SAY R  DY R R + + C A LLCDMAHISGLVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR              +Y+ EDKINF+VFP   GG
Sbjct:  140 HLSHGFSTPQ-KAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYR-KGTRSHDKRGNPILYELEDKINFSVFPGHQGG 294          

HSP 2 Score: 31.187 bits (69), Expect = 5.426e-46
Identity = 16/25 (64.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I ALAVAL QA TP F  Y K V
Sbjct:  298 HTITALAVALGQAKTPEFYQYQKDV 322          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.200e-45
Identity = 92/157 (58.60%), Postives = 111/157 (70.70%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHG++T   +K+SATS +F+S+PYKV++ +G IDYDKLEE A+ FRPK++I G S Y R  DY RFR +A K GA L+ DMAHISGLVAA    +PFEY  +VTTTTHKSLRGPR  MIFYR           E  +YD E+KIN AVFP   GG
Sbjct:  178 HLTHGFFTPA-RKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVE-TLYDLEEKINSAVFPGLQGG 332          

HSP 2 Score: 25.409 bits (54), Expect = 1.200e-45
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I  +AVALKQ  +  F  Y +Q+
Sbjct:  336 HTIAGIAVALKQCLSEDFVQYGEQI 360          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.565e-45
Identity = 90/157 (57.32%), Postives = 105/157 (66.88%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   KKISA S YFES+PY+V+ +TG IDYD LE  A  FRPK+++ G SAY R  DYAR R +AD   A L+ DMAHISGLV+A    +PFEY  +VTTTTHKSLRGPR  MIF+R               YD EDKINF+VFP   GG
Sbjct:  134 HLSHGYQTDT-KKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR-RGLRKHDKKGNPIYYDLEDKINFSVFPGHQGG 288          

HSP 2 Score: 34.6538 bits (78), Expect = 1.565e-45
Identity = 18/32 (56.25%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQVRGQWPVC 579
            H I ALAVALKQ   PA+K Y  QV     VC
Sbjct:  292 HTITALAVALKQCQEPAYKEYQAQVVKNAKVC 323          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 7.658e-45
Identity = 86/157 (54.78%), Postives = 105/157 (66.88%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY T   KKIS  S YFE+LPY+++  TGYIDY+KLEE A+ +RPK+I+ G SAY R  DYAR R + DK  A L+ DMAHISGLVAA+    PF +  IVTTT+HKSLRGPR  MIF+R           E  +Y+ E  IN +VFP   GG
Sbjct:  177 HLSHGYQTPT-KKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNAYLMADMAHISGLVAAKVMPGPFTHADIVTTTSHKSLRGPRGAMIFFRRGVRRTNKKGEE-ELYNLETPINASVFPGHQGG 331          

HSP 2 Score: 38.1206 bits (87), Expect = 7.658e-45
Identity = 18/25 (72.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H I ALAVALKQA TP F+AY  QV
Sbjct:  335 HTIAALAVALKQAQTPEFRAYQSQV 359          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.988e-45
Identity = 86/157 (54.78%), Postives = 103/157 (65.61%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HL+HGY    G  IS  S YF+S+PY V+ +TG IDYD L+  A  FRPK+I+ G SAY R  DYARF+ ++  CGA L+ DMAHISGLVAA    +PFE+  IVTTTTHKSLRGPR  MIF+R           E   Y+ E KINF+VFP   GG
Sbjct:  155 HLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLIDYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGKE-IPYELEKKINFSVFPGHQGG 310          

HSP 2 Score: 35.4242 bits (80), Expect = 9.988e-45
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  484 HQIGALAVALKQASTPAFKAYAKQV 558
            H IGA+AVALKQA +P FK Y +++
Sbjct:  314 HTIGAMAVALKQAMSPEFKEYQQKI 338          
BLAST of EY719586 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 4.691e-44
Identity = 92/157 (58.60%), Postives = 110/157 (70.06%), Query Frame = 2
Query:    2 HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSPSGG 472
            HLTHG++T   +K+SATS +F+SLPYKV+ +TG IDYDKLE+ A+ FRPK II G S Y R  DY RFR +A K GA L+ DMAHISGLVAA    +PFEY  +VTTTTHKSLRGPR  +IFYR           +  +YD E+KIN AVFP   GG
Sbjct:  174 HLTHGFFTPA-RKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNAKGVD-TLYDLEEKINSAVFPGLQGG 328          
The following BLAST results are available for this feature:
BLAST of EY719586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_NEUCR2.451e-4655.41Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_BOVIN3.193e-4659.24Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.193e-4657.96Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN4.161e-4659.24Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SCHPO5.426e-4657.32Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_CAEBR1.200e-4558.60Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYD_SCHPO1.565e-4557.32Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_NEUCR7.658e-4554.78Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_YEAST9.988e-4554.78Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEEL4.691e-4458.60Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-B07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719586 ID=EY719586; Name=EY719586; organism=Citrus sinensis; type=EST; length=1018bp
GCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAAAGATATCGGCGA
CTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTGAATTCGAGTACTGGG
TATATTGATTACGATAAGTTGGAGGAGAAGGCGTTGGATTTTAGGCCGAA
GTTGATCATTTGCGGTGGGAGTGCGTATCCGAGGGACTGGGATTATGCTA
GATTCAGAGCTGTTGCTGATAAGTGTGGTGCCCTTTTGCTCTGTGATATG
GCTCATATCAGTGGCCTTGTTGCTGCTCAGGAAGCTGCAAACCCCTTTGA
GTACTGTCACATAGTCACAACCACTACTCACAAGAGCTTGCGGGGTCCTA
GGGCTGGTATGATCTTCTACCGGAAGGGTCCTAAACCACCCAAGAAGGGC
CAGCCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGCTGT
CTTCCCATCCCCTTCAGGTGGGTCCTCACAACCCACCAGATTGGTGCTCT
AGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGA
AACAGGTCCGGGGCCAATGGCCAGTTTGCACCTTTGGGGAACTACCTGAC
GGGGCAAGGGATACAGCCTTTGGCACTGGAGGGAACTGGAAAACCACCCT
TGGTTCTCCTGGGATTCTACGCCCCTCCTTGGATTTGGCTGGGCAATAAA
GGTGAAAAAGGTTCTGGTGGACCTTTGGCAAATTTACTGGGGACACAGAA
TGGCTGGTGTTTGGGGGGCATCATGGTGCCTTGGGGCCCCCTGGAAAGAA
AAAAAAATTCGAAGTACCCCTGACCTAGGAATTCCCGAAATTTTATGTTG
AGCAAAGAGAATACCAATATACAACGGTGAAAGTACTATATTCCCCAGAG
GCTTTGGACACCTCCCCTGCCCTACGGAAAATATCCATGATGGGGAGGTA
TGGGTCGAACGCCCTTTCGATGGGACAGGAGATCTATTCTGTCCTGGCAG
CGTGTGCCGGGAGGGGGG
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